RnoEX6017431 @ rn6
Exon Skipping
Gene
ENSRNOG00000018485 | Gpr155
Description
G protein-coupled receptor 155 [Source:RGD Symbol;Acc:1309162]
Coordinates
chr3:60082196-60085909:-
Coord C1 exon
chr3:60085792-60085909
Coord A exon
chr3:60082380-60082464
Coord C2 exon
chr3:60082196-60082286
Length
85 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTTCTTGTTTCTAGGCC
3' ss Score
11.08
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
Exon sequences
Seq C1 exon
ACTATTGTTTGCGCTGGAATGGTGATATGGAATTTTGTTAAAGAAAAAAATTTTGTTGGACAAATTTTGGTGTTTGTTTTATTGTACAGCTCCCTGTACAGCACCTATCTATGGACAG
Seq A exon
GCCTTCTAGCAGTTTCTTTGTTTCTTTTAAAGAAGCGGGAGAGCGTTCAGATCCCAGTGGGCCTCATCATCATATCTGGCTGGGG
Seq C2 exon
AATCCCTGCTCTCCTCGTGGGCGTGCTTCTGATAACTGGAAAACACAATGGAGACAGCGTTGACTCGGCTTTCTTTTATGGAAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018485-'15-13,'15-12,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGCGCTGGAATGGTGAT
R:
CGAGTCAACGCTGTCTCCATT
Band lengths:
180-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]