MmuEX6102191 @ mm10
Exon Skipping
Gene
ENSMUSG00000041762 | Gpr155
Description
G protein-coupled receptor 155 [Source:MGI Symbol;Acc:MGI:1915776]
Coordinates
chr2:73363932-73367598:-
Coord C1 exon
chr2:73367481-73367598
Coord A exon
chr2:73364168-73364252
Coord C2 exon
chr2:73363932-73364022
Length
85 bp
Sequences
Splice sites
3' ss Seq
TCTTGGTTTCTTGTTTCTAGGCC
3' ss Score
9.83
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ACTATTGTTTGTGCTGGAATGATGATATGGAATTTTGTTAAAGAAAAAAATTTTGTTGGACAAATTTTGGTGTTTGTTTTATTGTACAGCTCCCTGTACAGCACCTATCTGTGGACAG
Seq A exon
GCCTTCTAGCAGTTTCTTTGTTTCTTTTAAAGAAGCGCGAGAGCGTTCAGCTCCCGGTGGGAATCATCATCATCTCTGGCTGGGG
Seq C2 exon
GATCCCTGCTCTCCTTGTGGGCGTGCTTCTGATAACTGGAAAACACAACGGAGACAGCATTGACTCAGCCTTCTTTTATGGAAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041762-'15-15,'15-13,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTGGAATGATGATATGGA
R:
GGCTGAGTCAATGCTGTCTCC
Band lengths:
179-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types