BtaEX0016526 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004091 | GTF3C4
Description
Bos taurus general transcription factor IIIC, polypeptide 4, 90kDa (GTF3C4), mRNA. [Source:RefSeq mRNA;Acc:NM_001192382]
Coordinates
chr11:102772557-102783906:+
Coord C1 exon
chr11:102772557-102772901
Coord A exon
chr11:102778982-102780793
Coord C2 exon
chr11:102783776-102783906
Length
1812 bp
Sequences
Splice sites
3' ss Seq
TTTTTATATCTTATTTTCAGGTT
3' ss Score
10.9
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
ATGAATACGGCCCTGACCCGGGTGGGGCCCGCGGCCGAGCGGCCCGCGCCGCCCGAGGAGGTGGAGGGCTCTGAGACCGGCGGGAAGGAGCCGGCGGCGGACGCGGCCCCGGGGCCCAGCACGGCGTTCCGCCTGCTGGTGACTCGGCGGGAGCCGGCGGTGAGGCTGCAGTACGCGGTGAGCGGCCAGGAGACGCTGGCGTGGTCCGAGGACCACCGCGTGTCGGTGTCCACGGCCCGCAGCATCGCCGTGCTGGAACTCATCTGCGACGTGCACAACCCGGGCCAGGACCTGGTTATCCACCGCACGTCGGTGCCCGCGCCTCTCCACAGCTGCTTCCTCAAA
Seq A exon
GTTGGCTCAAAAAGGGAAGTTGCCGAGTGTAAACAGAGATTTGCCACCTCTGAAGACCCCACAGTCAGTCAGACTTTCATGTTGGACAGGGTGTTCAACCCTGAGGGGAAGGCTCTGCCACCACTGAGAGGGTTCAAGTACACTAGCTGGTCCCCTGTGGGCTGTGACGCTAATGGCAGGTGCCTGCTGGCCGCACTGACCATGGACAATCGCCTGACCATCCAGGCTAACCTCAACAGACTGCAGTGGGTCCAGCTGGTGGACCTGACGGAGATTTATGGAGAGCGTCTCTATGAGACCAGCTACAGGTTCTCCAGAAACGAGGCCCCGGAGGGCAGTCTCAGGGATTTCGCCGAGTTTCAGAGGCGACACAGCATGCAGGCGCCGGTGCGCATGGAGTGGTCGGGCATCTGCACCACCCAGCAGGTCAAGCACAACAACGAGTGCCGCGACGTGGGCAGCGTGCTCCTGGCGGTCCTCTTCGAGAACGGGAACATCGCCGTGTGGCAGTTCCAGCTCCCCTTTGCAGGGAAGGAGTCCATCTCTTCATGCAACACCATCGAGTCAGGAATCAGCTCTCCTAGCGTTTTGTTCTGGTGGGAATATGAGCACAACAATCGGAAAATGAGCGGCCTTATAGTGGGGAGTGCTTTTGGGCCTGTGAAAATCCTGCCTGTCAACCTTAAAGCAGTCAAAGGCTATTTCACCTTGAGGCAGCCTGTCGTCTTGTGGAAAGAAATGGACCAGCTGCCAGTCCACAGCATCAAGTGCGTGCCGCTGTATCACCCTTACCAGAAGTGCAGCTGCAGCTTAGTGGTGGCCGCACGAGGGTCCTATGTGTTTTGGTGTCTTCTCCTGATCTCCAAAGCAGGTCTGAATGTTCACAACTCTCACGTCACAGGCCTGCACTCCCTGCCCATCGTCTCCATGACTGCCGACAAGCAGAATGGGACGGTGTATACTTGCTCCAGTGACGGCAAGGTGAGGCAGCTGATCCCCATTTTCACAGATGTGGCGTTGAAGTTTGAGCACCAGTTGATTAAACTCTCTGATGTGTTTGGCTCCGTGAGGACACACGGGATAGCCGTGAGCCCCTGCGGCGCATACCTGGCCGTCATCACCACTGAGGGCATGGTCAACGGCCTCCATCCCGTTAACAAAAACTACCAGGTTCAGTTCGTTACTCTCAAAACCTTTGAAGAGGCAGCTGCTCAGCTTCTGGAGTCTTCTGTCCAGAATCTCTTTAAGCAGGTAGATTTAATAGACCTAGTACGCTGGAAGATTTTAAAGGATAAGCATATCCCTCAATTTTTACATGAAGCTTTGGAAAAAAAGATCGAAAGCAGTGGGGCCACCTATTACTGGCGTTTCAAACTCTTCCTCTTGAGAATTTTATATCAGTCGATGCAGAAAACCCCTTCAGAAGCCTTGTGCAAACCCACCCACGAGGACTCAAAAATCTTGCTAGTTGACTCACCTGGGATGGGCAATGCTGAGGATGAACAGCAGGAGGAAGGCACCTCTTCCAAACAGATTAGTAAGCAAAGCAAAGACGGCGATCCAGAGGACCCCACAGAGGACTTACTCCCTCAATCTGCGGATACTGGAGGCCGAGAGCCAATGGAAGAGAAACTCCTTGAAATCCAGGGAAAAATTGAAGCAGTGGAAATGCACTTGACGAGGGAGCACATGAAGCGAGTCCTGGGCGAAGTGTATCTACACACCTGGATCACAGAAAACACTAGCATCCCCACCAGGGGACTCTGTAACTTCCTGATGTCTGATGAGGAGTATGATGACAGAACCGCACGG
Seq C2 exon
GTGCTGATTGGACACATCTCAAAGAAGATGAACAAGCAGACCTTCCCTGAGCACTGCAGTTTGTGTAAGGAGATCTTGCCGTTTACAGATCGCAAGCAGGCCGTCTGCTCCAATGGCCACATCTGGCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004091_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=0.103 C2=0.000
Domain overlap (PFAM):
C1:
PF126572=TFIIIC_delta=PU(29.9=50.4)
A:
PF126572=TFIIIC_delta=PD(69.1=22.2)
C2:
PF126602=zf-TFIIIC=PU(43.3=88.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGGAGGGCTCTGAGAC
R:
CAAACTGCAGTGCTCAGGGAA
Band lengths:
351-2163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development