HsaEX0029012 @ hg19
Exon Skipping
Gene
ENSG00000125484 | GTF3C4
Description
general transcription factor IIIC, polypeptide 4, 90kDa [Source:HGNC Symbol;Acc:4667]
Coordinates
chr9:135553364-135559080:+
Coord C1 exon
chr9:135553364-135553426
Coord A exon
chr9:135554265-135555190
Coord C2 exon
chr9:135558950-135559080
Length
926 bp
Sequences
Splice sites
3' ss Seq
TCACAATTCCCATGTCACAGGCC
3' ss Score
5.77
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
GTTGGCTCAAAAACAGAAGTTGCTGAGTGCAAGGAGAAATTCGCCGCCTCCAAGGACCCCACG
Seq A exon
GCCTTCACTCACTGCCAATTGTCTCCATGACTGCAGACAAACAGAATGGAACAGTCTATACTTGCTCCAGTGACGGAAAGGTGAGGCAGCTGATTCCCATTTTCACAGATGTTGCATTGAAGTTTGAACACCAGTTGATTAAACTCTCAGATGTGTTTGGCTCAGTGAGGACTCACGGGATAGCAGTGAGCCCCTGCGGTGCATACCTGGCCATCATCACCACTGAGGGCATGATCAACGGCCTCCACCCTGTTAACAAAAACTACCAGGTCCAATTTGTTACTCTCAAAACCTTTGAAGAGGCAGCTGCTCAGCTCCTGGAATCTTCAGTTCAAAACCTTTTTAAGCAGGTAGATTTAATAGACCTAGTACGCTGGAAGATTTTAAAAGATAAACATATCCCTCAATTTTTACAAGAAGCTTTGGAAAAAAAGATTGAAAGCAGTGGAGTCACCTATTTTTGGCGTTTTAAGCTTTTCCTCCTGAGGATTTTATATCAGTCAATGCAGAAAACCCCTTCAGAAGCCTTGTGGAAACCCACCCATGAGGACTCAAAAATCTTACTAGTGGATTCGCCTGGGATGGGCAATGCTGACGATGAACAGCAGGAAGAAGGCACTTCTTCCAAACAGGTGGTGAAGCAAGGCCTGCAGGAGAGGAGCAAGGAAGGAGATGTAGAGGAGCCCACTGATGACTCGCTCCCCACGACTGGAGATGCTGGAGGCCGTGAGCCAATGGAAGAGAAACTCCTGGAAATCCAAGGGAAAATCGAAGCTGTGGAGATGCACTTGACCAGGGAACACATGAAGCGAGTCTTAGGAGAAGTGTATCTGCACACCTGGATCACAGAAAACACTAGCATCCCCACCCGCGGACTCTGTAACTTTTTAATGTCTGATGAAGAGTATGATGACAGAACTGCACGG
Seq C2 exon
GTGCTGATTGGACATATCTCAAAGAAGATGAACAAACAGACTTTCCCTGAGCACTGTAGTTTGTGTAAAGAGATCTTGCCATTCACAGATCGCAAACAGGCAGTCTGTTCCAATGGCCACATTTGGCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125484_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.108 C2=0.000
Domain overlap (PFAM):
C1:
PF126572=TFIIIC_delta=PD(69.1=22.0)
A:
PF126572=TFIIIC_delta=PD(5.8=50.0)
C2:
PF126602=zf-TFIIIC=PU(43.3=88.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCAAAAACAGAAGTTGCTG
R:
TGTGGCCATTGGAACAGACTG
Band lengths:
182-1108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)