GgaEX1027804 @ galGal4
Exon Skipping
Gene
ENSGALG00000026104 | GTF3C4
Description
general transcription factor IIIC, polypeptide 4, 90kDa [Source:HGNC Symbol;Acc:HGNC:4667]
Coordinates
chr17:6638156-6640660:+
Coord C1 exon
chr17:6638156-6638265
Coord A exon
chr17:6638602-6639105
Coord C2 exon
chr17:6640530-6640660
Length
504 bp
Sequences
Splice sites
3' ss Seq
ATATTCCTCAATTTTTACAGGAA
3' ss Score
8.23
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GTCTGAATGTCCATAATTCCCACGTGACAGGGCTACATTCTTTGCCAATTGTATCTATGACGGCGGACAAACAGAACGGCACAGTGTATACGTGCTCCAACGATGGAAAG
Seq A exon
GAAGCACTGGATAAAAAGATTGAGAGCTGTGGTTCTACTTATTTCTGGCGGTTTAAGCTGTTTCTCCTGAGGATTTTATACCAGTCAATGCAGAAAGCTCCCTCAGAGGTGATGTGGAAACCTTCACACGAGGATGCAAAAATACTGATATCTGATTCCCCTGGAATGGGCAGCACTGAAGATGATCAAGAGGAAGGAACTTCTAAACAAGCCAGCAAGCAGAGCCTATGTGACACGGGCAAAGGTATGGACATAGATGACACTGCAGATGATTCTCTTCCTCAGTCGAGTGACATAGGAGGCCGCGAGCCAATGGAAGAAAAGCTTCTTGAAATACAGGCACAAATTGAGGCAGTAGAAATGCACTTGACACGAGAACACATGAAACGGGTGTTGGGAGAAGTTTATCTACACACATGGATTACAGAAAACACCAGTATTCCCACCAGAGGAGTCTGTGATTTCTTAATGTCCGATGATGGATATGATGACAGAACAGCACGA
Seq C2 exon
GTGCTGATTGGGCATATCTTAAAGAAAATGAACAAACAGACTTTTCCAGAGCACTGCAGCTTGTGCAAGGAGATCTTGCCGTTCACTGACCGCAAACAGGCAGTCTGCTCCAATGGACATATTTGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026104_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.099 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF126572=TFIIIC_delta=PD(69.1=22.1)
C2:
PF126602=zf-TFIIIC=PU(42.7=86.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGAATGTCCATAATTCCCACGT
R:
AGCCAAATATGTCCATTGGAGCA
Band lengths:
238-742
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]