DreEX6083926 @ danRer10
Exon Skipping
Gene
ENSDARG00000069538 | gtf3c4
Description
general transcription factor IIIC, polypeptide 4 [Source:ZFIN;Acc:ZDB-GENE-041008-147]
Coordinates
chr21:17382432-17388021:-
Coord C1 exon
chr21:17387733-17388021
Coord A exon
chr21:17382797-17384518
Coord C2 exon
chr21:17382432-17382562
Length
1722 bp
Sequences
Splice sites
3' ss Seq
AAGTTTTTTTTTTTCCACAGGTG
3' ss Score
10.87
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
AAACAGTTCTTCAGAGAAAGCAGGGACCGCGTCTGAAGCCCCGTCAGGACCGGAGGATGATTTTTGGGCGGGACAGGGACCAATAGTGCTGCGGGATCCTGCGATTAAATTGTTGAGTCCGGTTAGCGGTGTGGAGCCGCTGTCGTGGGCAGAAGATCACAGACTGGCGGCCTGCAACACGAACAGCGTGTCTCTGATGGAGCTGGTGTGTGACATACACAGTCTCAGTCAAAACCTGGTGCTGCATCGCACTCACATCCCCGTCCCCACCACCACATGTGAACTCAAG
Seq A exon
GTGGGCTCAGAAAAAGATGTGAGGGCTGTTAAAGAAAGCTTTGCCAATAGTAAAGACCCAGTAGTAAGCCAAATGATCATGATAGACCGAGTCATCAATCCTCAATGTGGACCTCTCCATGGCGTCAAGTACACTAGTTGGTCACCGTTAGGCTGTGACAAACTCGGCCGCTGCCTTCTTGCTTTCCTAACACTTGACAATCGTCTCACAATCCACAGCAGTCACTTGCAACTGCAGTGGACGCTACTGCTGGACCTTACAGAACTATATGGCGAAATGTTAAAAACCAGGAAATACTCCGCTCAGAATGATGGCACACCACCGGTCTCCTTTAAAGACTTCGATGAACTGCAGCGTCGGTTTCGTATGCAGACACCAGTGCGCATGGAGTGGTCCAGTTTGTGCAGTATGCAGCAAGTTCAGAGCGATAACGCTCATAAAGATATCAACACAGTTCTTCTAGCTGTACTCATGGAGAATGGAGACGTGGTGGTGTGGCAGTTCAGCTTGCCCCTAAACGGAAAGGAATCAGTGGTGTCATGCAGCACCATCAAATCTGGTGTGTCGTCACCAAGCGCGCTCACCTGGTGGCAATATGAGCACGGCGGGCGGAAAATGAGCGGACTGATCATAGGGAGCTCCGTAGGACCTGTAAAGATCCTCCCAGTCAACATTAAGGCAGTGAAGGGTTACTTCACCCTCAGGCAGCCTGTGGTTTTGTGGCAGGAGAGCGACCAGATTCCTGTCCACAACATCAAATGCATCACACTCTTCCATCCGCACCAGAAATGCAACTGCAGTTTAGTGGTTGCGGCACGTGGTCCGTATATCTTCTGGTGCTTACTGCTGATCTCCAAAGCTGGTCTGAATGTTCACAATTCCCACATCACGGGTCTTCATTCCACCCCTATCATATCCATGACGGCTTGCCACAATAATGGGACTGTTTTAACATGCTCACTAGATGGGAAGGTTAAGAAGCTAACGACTGTTTTCACAGACCTAGCTGTCGAGTTCAAGCAAGAAGAGATTGTTCTGCCTGAAGGAGTCGCGGGTCGACGGATACACGGTATATCAATCAGTCCAAACAGTGCCTACTTGGCTGTTCTCTCCAATGAGGGTATGAACAATGGCTTCCATCCTGTCGCTCTCAACTACCAGGTACAGTTCATCACCTTTAAGACTCCAGATGAAGCGGCAGCTAAGATGCTTGATGCTCACTGTCTCTTTAGAAACTCTGATTTGCTGGATTTGTTACGATGGCGGATACTAAAAGACAAAAGCATCCCTTCGGCCTACGAGAATAATCTAGAAGAGAAGCTGCAAACCTCAGGGTCCACTTACCTGTGGCGTCTTAAGCTTTTCTTTCTCAGAACGCTTCACAAGTCCATGCAGAAAACTCCTTCAGAGGCTCTGTGGCAGCCAAGGCGAAGAAGTGGTCAGAGTTTAGTTGGTGATGGTGATGAAGGGGGTGGAGGTGATGAAGATGAGATGATGGAGGACAGACAGGGGGATGCAGAAATTAGGGAAAGAGAGGAGAGAATGAAAGAGATTGGCAGCAGGATCGAAGCTGTGGAGTCCCATCTGATCCGGGAGAACATGAAGAAGGTGCTGGGCGAGGTGTATCTGCACACCTGTGTCACTCAAAACACACGTGTACCCACTAAAGGTGTGTGTGACTTCCTCACAAATGACCCTGCTAATGAAGACAGGGCAGCCAAG
Seq C2 exon
GTGCTGATAGGTCATATCATGAATAAGATGAATAAACAGACATTTCCAGAGTATTGCGCTCTCTGTAAAGAAACTCTGCCCTTCACCGACTGCAAGCGGGCAGAGTGCAAGAATGGACACAGGTGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069538-'1-1,'1-0,4-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.097 C2=0.000
Domain overlap (PFAM):
C1:
PF126572=TFIIIC_delta=PU(15.8=80.6)
A:
PF126572=TFIIIC_delta=PD(82.9=22.8)
C2:
PF126602=zf-TFIIIC=PU(43.3=88.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGGGACCAATAGTGCTGC
R:
CTGAGCCACCTGTGTCCATTC
Band lengths:
349-2071
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]