MmuEX6100036 @ mm9
Exon Skipping
Gene
ENSMUSG00000035666 | Gtf3c4
Description
general transcription factor IIIC, polypeptide 4 [Source:MGI Symbol;Acc:MGI:2138937]
Coordinates
chr2:28686022-28692036:-
Coord C1 exon
chr2:28691931-28692036
Coord A exon
chr2:28689070-28690893
Coord C2 exon
chr2:28686022-28686152
Length
1824 bp
Sequences
Splice sites
3' ss Seq
TTGTCTATCTCTATTTTCAGGTT
3' ss Score
11.71
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
AGCTTTCATCATTTGGCTGAGCACATGATACGTGTTACAGACCCAGACATGGGGGTGATGAGACAAAGCTAGAATGATCTGAGAAGGCCTCCTAAGATTAGACCTG
Seq A exon
GTTGGCTCAAAAACAGAAGTTGCTGAGTGCAAGGAAAAGTTCGCTTCCTCTAAAGACCCCACCATCAGCCAGACTTTCATGCTAGACAGGATGTTCAACCCCGAGGGGAAGGCCTTGCCCCCAATGCGGGGTTTCAAATACACTAGCTGGTCTCCAATGGGTTGTGATGCAAATGGCAGGTGCCTCTTGGCAGCACTGACCATGGACAATCGCCTGACTGTGCAGGTGAACCTCAACAGACTCCAGTGGGTTCAGCTGGTTGATCTGACGGAGATTTATGGAGACCGTCTTTATGAGACTAGTTATAGACTGTCTAAAAATGAGGCTCCTGAGGGAAATCTCGGGGATTTTGCTGAGTTTCAGAGGAGACACAGTATGCAGACCCCAGTCAGAATGGAATGGTCGAGTATCTGTACCACTCAGCAGGTCAAGCACAACAACGAGTGCCGGGATGTGAGCAGCGTGCTGCTGGCTGTCCTCTTTGAGAACGGGAATATAGCTGTGTGGCAGTTCCAGCTGCCATTCGTGGGGAAGGAGTCCATCTCTTCATGCAACACTATTGAGTCAGGAATCAGCTCCCCCAGTGTTTTGTTTTGGTGGGAATATGAGCACAATAATAGGAAAATGAGTGGCCTTATTGTGGGCAGTGCTTTTGGACCTGTAAAAATTCTCCCTGTCAATCTCAAAGCAGTGAAAGGCTACTTTACTTTAAGGCAGCCTGTTGTCTTGTGGAAAGAAATGGACAAGTTACCTGTGCACAGCATCAAATGTGTGCCACTTTACCACCCCTACCAGAAGTGTAGCTGTAGCTTAGTGGTAGCTGCAAGAGGCTCCTATGTGTTTTGGTGTCTTCTTCTGATCTCCAAGGCAGGTCTGAATGTTCACAATTCCCACGTCACAGGCCTCCACTCACTGCCCATCGTCTCCATTACTGCAGACAAGCAGAATGGAACAGTGTACACCTGCTCTAGTGATGGGAAGGTGAGGCAGTTGATTCCCATTTTCACAGATGTTGCATTAAAGTTTGAACACCAGCTGATTAAGCTCTCAGATGTCTTTGGCTCAGTGAGGACTCACGGCATTGCAGTGAGTCCCTGTGGTGCTTATCTGGCCATCATCACCACTGAGGGCATGATGAATGGCCTCCATCCTGTGAATAAGAACTACCAGGTCCAGTTTGTTACTCTGAAGACCTTTGAAGAGGCAGCTGCTCAGCTCTTGGAGTCTTCAGTTCAGAATCTCTTTAAGCAGGTAGACTTGATCGACCTGGTCCGCTGGAAAATTTTAAAAGATAAACATATTCCTCAGTTTTTACATGAAGCATTGGAAAAAAAGATTGAAAGCAGCGGGGTTACCTATTTTTGGCGTTTTAAGCTTTTCCTTCTAAGGATTTTGTATCAGTCAATGCAGAAATCCCCTTCCGAGGCCTTATGGAAACCCACCCATGAGGACTCAAAAATCTTACTGGTTGACTCACCTGGGATGGGCGACGGTGAGGATGAGCAGCAAGAAGAAGGTACTTCCAAGCAGGGGACTAAGGCTGGCCTGCAGGAGAAGAGCAAAGAAGGTGACACAGAGGAGACCCCTGAGGACTCACTCACTGCAGGGGGAGACACCGGAGGCCGTGAACCTGTAGAGGAAAAGCTCCTTGAGATCCAAGGGAAGATTGAGGCTGTGGAGATGCACCTGACCAGGGAGCACATGAAGCGGGTCCTGGGAGAAGTGTACCTGCACACCTGGATCACAGAGAACACCAGCATACCCACCAGAGGGCTCTGTAACTTCCTGATGTCTGATGAGGATTATGATGACAGGACAGCACAG
Seq C2 exon
GTCTTGATTGGACATATCTCCAAGAAGATGAACAAACAGACCTTCCCTGAGCGCTGCAGTCTGTGTAAGGAGATCTTACCATTCACAGATCGCAAGCAAGCTGTTTGTTCCAATGGGCACATCTGGCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035666-'2-3,'2-2,6-3=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.348 A=0.108 C2=0.000
Domain overlap (PFAM):
C1:
PF126572=TFIIIC_delta=PD(11.8=33.3)
A:
PF126572=TFIIIC_delta=PD(69.1=22.0)
C2:
PF126602=zf-TFIIIC=PU(43.3=88.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCATCATTTGGCTGAGCA
R:
GCCAGATGTGCCCATTGGAA
Band lengths:
232-2056
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: