BtaEX0017451 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005976 | HSD17B7
Description
Bos taurus hydroxysteroid (17-beta) dehydrogenase 7 (HSD17B7), mRNA. [Source:RefSeq mRNA;Acc:NM_001083375]
Coordinates
chr3:6642003-6651802:-
Coord C1 exon
chr3:6651688-6651802
Coord A exon
chr3:6645727-6645921
Coord C2 exon
chr3:6642003-6642107
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTATTCCTCATTCAGATT
3' ss Score
9.15
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
AAAAGTGATTCATATGTTCTCCACAGCTGAAGGACTGCTGACCCAGAATGACAAGATAACCCCTGATGGGCTCCAGGAGGTGTTTGAAACCAATGTCTTTGGCCACTTTATCCTG
Seq A exon
ATTCAGGAACTAGAATCTCTCCTGTGTCACAGTGAGAGTCCATCTCAGCTCATTTGGACATCATCTCGCAATGCAAAGAAATCTAATTTCAGCTTTGAGGATGTCCAGCACAGCAAAGGCCAGGAGCCCTACAGCTCTTCCAAATACGCGATTGACCTTCTGAGTGTGGCTTTGAACAGACACTTCAACCATCAG
Seq C2 exon
GGTCTGTATTCCAGTGTAGTGTGCCCAGGTACGATGCTGACCAATTTGACATATGGAATTCTACCTCCCTTTGTGTGGATGTTAATCATGCCAATCATATGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005976-'4-8,'4-6,5-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.008 C2=0.000
Domain overlap (PFAM):
C1:
PF0010620=adh_short=PD(12.8=41.0),PF0010620=adh_short=FE(33.6=100)
A:
PF0010620=adh_short=PD(54.9=95.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGATTCATATGTTCTCCACAGCT
R:
TGATTGGCATGATTAACATCCACAC
Band lengths:
210-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development