DreEX6022634 @ danRer10
Exon Skipping
Gene
ENSDARG00000088140 | hsd17b7
Description
hydroxysteroid (17-beta) dehydrogenase 7 [Source:ZFIN;Acc:ZDB-GENE-061013-378]
Coordinates
chr6:34963951-34969804:-
Coord C1 exon
chr6:34969690-34969804
Coord A exon
chr6:34968273-34968467
Coord C2 exon
chr6:34963951-34964055
Length
195 bp
Sequences
Splice sites
3' ss Seq
CATTTTTTATATTTTGACAGGTG
3' ss Score
9.35
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
AAATGCGATTAAAATGTTGACCACGGGGGAGGGTATTCTGACCCAGGAAGATAAGGTCACACCCATTGGTTTGCAGGAGGTGTTTGCTACTAATCTTTTTGGTCATTTCCTTCTG
Seq A exon
GTGAAAGAACTGGAGCCTTTATTGTGCCAGACAGAGCACAATTCTTTAGTCATCTGGACGTCCTCCAGTAATGCCCAGCGATCCTCCTTTAATCTCGAAGATGTGCAGCATAAGAACGGCCCTTTGCCCTACAGCTCGTCGAAATATGCTTCAGACCTGCTTAGCTTAGCCTTGAACCGCCACTACAACAGCCAG
Seq C2 exon
GGTATGTTCTCATCAGTGATCTGCCCTGGTCTGGTCATGACTAACCTCACCTATGGCATTCTGCCTTCATTGTTCTGGACTATCATCATGCCAATATTGTTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088140-'4-6,'4-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCGATTAAAATGTTGACCACGG
R:
AGAAACAATATTGGCATGATGATAGT
Band lengths:
218-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]