GgaEX0003399 @ galGal4
Exon Skipping
Gene
ENSGALG00000002681 | HSD17B7
Description
3-keto-steroid reductase isoform 1 [Source:RefSeq peptide;Acc:NP_001264435]
Coordinates
chr8:3791265-3792624:-
Coord C1 exon
chr8:3792510-3792624
Coord A exon
chr8:3791809-3792003
Coord C2 exon
chr8:3791265-3791369
Length
195 bp
Sequences
Splice sites
3' ss Seq
TGGTGGCAATTCCTTTTCAGATT
3' ss Score
7.66
5' ss Seq
CAGGTGACG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GAGGTTACTCCATATGCTGACCACTGCAGAAGGCGTCATGACGCAGACGGACAGACTGAACGGGGATGGGCTGCAGGAGGTCTTTACCACCAACCTCTTTGGGCACTTCATCCTG
Seq A exon
ATTCGTCAGCTCGAGTCTCTGCTCTGTGGCAACGAAAAGCCGTCACGACTCATCTGGACCTCTTCCAGCAATGCAAGGGAATCTGCCTTCAGCCTGTCTGACTATCAGCATGCCAAGGGGCAGGAATCATACAGTTCCTCCAAATACGCCACTGACCTGACAAGTGTGGTTCTGAACAGGAAATTTAATAAGCAG
Seq C2 exon
GGTCTGTATTCCAGTGTTGTTTGTCCTGGCCTCGTTATGTCCAACATGACCTTCAAAATCCTGCCCGTTTTTCTGTGGGTGCTGCTGATGCCCATCATGTTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002681_MULTIEX1-1/4=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010620=adh_short=FE(36.2=100)
A:
PF0010620=adh_short=PD(51.4=83.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTACTCCATATGCTGACCACTG
R:
TGATGGGCATCAGCAGCAC
Band lengths:
210-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]