RnoEX6045289 @ rn6
Exon Skipping
Gene
ENSRNOG00000002826 | Hsd17b7
Description
hydroxysteroid (17-beta) dehydrogenase 7 [Source:RGD Symbol;Acc:2837]
Coordinates
chr13:88298751-88303439:-
Coord C1 exon
chr13:88303325-88303439
Coord A exon
chr13:88299980-88300174
Coord C2 exon
chr13:88298751-88298855
Length
195 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTCATCCTCATTCAGATT
3' ss Score
9.32
5' ss Seq
AAGGCAAGG
5' ss Score
2.76
Exon sequences
Seq C1 exon
AAATGTGATTCATATGTTCTCCACAGCGGAAGGACTTTTGACCCAGAATGACAAGATTACTGCTGATGGGTTCCAGGAGGTGTTTGAAACCAATCTCTTTGGCCACTTTATCCTG
Seq A exon
ATTCGGGAACTGGAACCACTTCTCTGCCACAGTGACAACCCCTCTCAGCTCATCTGGACGTCTTCTCGAAATGCAAAGAAGTCTAACTTCAGTCTTGAGGACATCCAGCACGCCAAAGGCCAGGAACCTTACAGCTCTTCCAAATACGCTACTGACCTCCTGAATGTAGCTTTGAACAGGAATTTCAATCAGAAG
Seq C2 exon
GGTCTGTATTCCAGTGTGACGTGTCCAGGGGTCGTAATGACCAATCTGACGTATGGGATTCTGCCCCCCTTTGTTTGGACGTTGCTTCTCCCGGTGATATGGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002826-'5-6,'5-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010620=adh_short=PD(10.7=33.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGATTCATATGTTCTCCACAGC
R:
GAGCCATATCACCGGGAGAAG
Band lengths:
218-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]