MmuEX0023305 @ mm9
Exon Skipping
Gene
ENSMUSG00000026675 | Hsd17b7
Description
hydroxysteroid (17-beta) dehydrogenase 7 [Source:MGI Symbol;Acc:MGI:1330808]
Coordinates
chr1:171889818-171894636:-
Coord C1 exon
chr1:171894522-171894636
Coord A exon
chr1:171891136-171891330
Coord C2 exon
chr1:171889818-171889922
Length
195 bp
Sequences
Splice sites
3' ss Seq
TCTGCGTCTTCTTCATTCAGATT
3' ss Score
9.92
5' ss Seq
AAGGCAAGG
5' ss Score
2.76
Exon sequences
Seq C1 exon
AAATGTGATTCATATGTTCACCACAGCGGAAGGAATTTTGACCCAGAATGACTCGGTCACTGCCGACGGGTTGCAGGAGGTGTTTGAAACCAATCTCTTTGGCCACTTTATTCTG
Seq A exon
ATTCGGGAACTGGAACCACTTCTCTGCCATGCGGACAACCCCTCTCAGCTCATCTGGACGTCCTCTCGCAATGCAAAGAAGGCTAACTTCAGCCTGGAGGACATCCAGCACTCCAAAGGCCCGGAACCCTACAGCTCTTCCAAATATGCTACCGACCTCCTGAATGTGGCTTTGAACAGGAATTTCAACCAGAAG
Seq C2 exon
GGTCTGTATTCCAGTGTGATGTGCCCAGGCGTCGTGATGACCAATATGACGTATGGAATTTTGCCTCCCTTTATCTGGACGTTGCTCCTACCCATAATGTGGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026675-'4-6,'4-5,5-6
Average complexity
ME(5_5-5_6[100=99])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010620=adh_short=PD(1.8=5.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCATATGTTCACCACAGCGGA
R:
CCACATTATGGGTAGGAGCAACG
Band lengths:
210-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: