BtaEX0017454 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005976 | HSD17B7
Description
Bos taurus hydroxysteroid (17-beta) dehydrogenase 7 (HSD17B7), mRNA. [Source:RefSeq mRNA;Acc:NM_001083375]
Coordinates
chr3:6629251-6641268:-
Coord C1 exon
chr3:6641212-6641268
Coord A exon
chr3:6635747-6635845
Coord C2 exon
chr3:6629251-6630566
Length
99 bp
Sequences
Splice sites
3' ss Seq
GACACCCTCTTCCTTTCCAGGTC
3' ss Score
12.3
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
TTACGCTTTTTTGCAAACGCTTTCACGTTGACACCTCACAATGGAACAGAAGCACTG
Seq A exon
GTCTGGCTTTTCCACCAAAAGCCCGAGTCTCTCAATCCTCTGGTGAAATATCTGAGTGCCACCACTGGCTTTGGAAGCAATTATGTGACGTCCAAAAAG
Seq C2 exon
ATGGACCTAGATGAAGACACTGCTGAAAAATTTTACCAAAAGCTACTGAAACTTGAAAAGGAGATTAGGGTCACCATTCAAAAAACCAATAACCAGAACTGAAAATGATGCTCTCTGAAACATACTGTGCCTTTTGTGGGTTCTGGAGTGTGTGGGTTTCTCCTGAGTTGGACCATGTGCATTTGTGGTAAAAAGTGATTTCTGCTGGTCTCTTCATTGCAGAATCACCTCTACGATTATGTTTGTGTGTGCATGTGAGAAAAGAATGTCTGTTATTTTATCAGTCTTTAAGAATGATGTCACATCAGAGTCGAGCTAGAGTCACCCAACTGAGTACCTGTTTGCTCTGCTAACAAGAGCACAAGCTCTATTTCATGGGATGAGGTATTGACTTGAATAATTATGACACAGACACATACTGATTCTCCTTTGCACCTGCCCCAGAAGGAGGACGTACTACTCATTCTCTGAGTAGCAGTCTTAGCCTTGTTCTTCACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005976_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTTGACACCTCACAATGGA
R:
TCCAGAACCCACAAAAGGCAC
Band lengths:
181-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development