RnoEX0042601 @ rn6
Exon Skipping
Gene
ENSRNOG00000002826 | Hsd17b7
Description
hydroxysteroid (17-beta) dehydrogenase 7 [Source:RGD Symbol;Acc:2837]
Coordinates
chr13:88291838-88298545:-
Coord C1 exon
chr13:88298489-88298545
Coord A exon
chr13:88294719-88294817
Coord C2 exon
chr13:88291838-88291979
Length
99 bp
Sequences
Splice sites
3' ss Seq
GACATGCTCTTCTCTTCCAGGTG
3' ss Score
12.18
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTTCGCTTTTTTGCACATGCGTTCACTGTGACACCGTACAATGGTGCAGAGGCATTG
Seq A exon
GTGTGGCTTTTCCACCAAAAACCGGAGTCTCTCAACCCTCTGACCAAATACTTGAGCGGCACCACAGGATTAGGGACTAATTATGTCAAGGGCCAAAAG
Seq C2 exon
ATGGACGTAGATGAAGACACTGCAGAAAAGTTCTACAAGACCTTACTGGAGCTAGAAAAGCAAGTCAGGATCACCATTCAGAAATCAGATCACCACAGCTGACAGCGACGTTCCCCAGAGCATCCAGTCCGCGTACGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002826_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCACATGCGTTCACTGTGA
R:
GGACTGGATGCTCTGGGGAA
Band lengths:
177-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]