MmuEX6029050 @ mm9
Exon Skipping
Gene
ENSMUSG00000026675 | Hsd17b7
Description
hydroxysteroid (17-beta) dehydrogenase 7 [Source:MGI Symbol;Acc:MGI:1330808]
Coordinates
chr1:171879666-171889610:-
Coord C1 exon
chr1:171889554-171889610
Coord A exon
chr1:171886066-171886164
Coord C2 exon
chr1:171879666-171883265
Length
99 bp
Sequences
Splice sites
3' ss Seq
GACACGCTCTTCCTTTCCAGGTG
3' ss Score
11.95
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
CTTCGCTTTTTTGTAAATGCGCTCACTGTGACACCGTACAACGGAGCAGAGGCCCTG
Seq A exon
GTGTGGCTCTTCCACCAAAAACCGGAGTCTCTTAATCCTCTGACCAAATACGCGAGCGCCACCTCGGGATTTGGGACTAATTACGTCACGGGCCAAAAG
Seq C2 exon
ATGGACATAGATGAAGACACTGCTGAAAAATTCTATGAGGTCTTACTGGAGCTGGAAAAGCGTGTCAGGACCACCGTTCAGAAATCGGATCACCCGAGCTGATGTAGGCGTTCCTCAGGGCACCCCGTGGGCACCTCCTGTACGCCATGGCACACGTGGCTTTCCATCTCGCTGGGTGATACACATTTGCAGTAAACCATAAGCCATGACGATCTCTCCTCCTACCTTTCACAGTGATCTCCAAGACTGTGTGTGTGCACATTTTTGCAGGCGTGCACACACATGTGAGAAAGGACTGGCAAAGTAGAGGGACCAACTACTTACCCCTCCAGAGCAGTGTCCTGTTGGAACTGCTAGAGGTTTCCTGCGGTGCATCCTTGGATCGCTTTCTGCCTCCTAGAGCCCAGTAGTTTTGACTTGTGTGATGGGGACACAGTACAGCCTGAAGCTTCTTTTAGTCTCAGCACGGAGGGGCAATGCCACTGGGTAGGACTTCTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026675-'10-10,'10-9,11-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.212
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACTGTGACACCGTACAA
R:
TACAGGAGGTGCCCACGG
Band lengths:
179-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: