DreEX0038244 @ danRer10
Exon Skipping
Gene
ENSDARG00000088140 | hsd17b7
Description
hydroxysteroid (17-beta) dehydrogenase 7 [Source:ZFIN;Acc:ZDB-GENE-061013-378]
Coordinates
chr6:34959968-34963847:-
Coord C1 exon
chr6:34963791-34963847
Coord A exon
chr6:34961053-34961151
Coord C2 exon
chr6:34959968-34960750
Length
99 bp
Sequences
Splice sites
3' ss Seq
TATTGTTTTTTATTACACAGTAT
3' ss Score
5.93
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
ATAAGGATATTCACCAATTCTTTTACCCTCTCACCATACAATGGAGCGGAGGCTTTG
Seq A exon
TATTGGCTGTTCAAGCAGAAACCTGAGTCTCTGGACCCGATGGCCAAATACCATAGTTTGACCTCTGGGCTCGGAAACAATTACACCCGACCAAGCAAG
Seq C2 exon
ATGGATCTTGATGAAAACATGTCAGAGGCCTTCTATGTGAAGCTGTTAGAGCTGGAAGATACAGTGCGGAAGAAGCTAAGAGCAGAGAATCCTGATTTCAAAGAAAGAAATGGAATGTGAAAAATGGAGAAAACTTTACAAACCACACTTCCATCTTTAAAAATGATCTAGGTCATTTATAAACTGCTCATGGAGATTTTTCGAAATATTAGGTTTGGTTGGTTTGAATGTCTTAAAAATAGATAAAGATCCCAAAAAAAAAAAACATTTCAGTTAATTTACTTAACCCTCTGGCCAATTTAAGATGCTTGGGGCTATTTTTGTAATCATCATAATTACTGTGAAAAGTCAGAGTGTCTGACTGTGCTAGAAATGGGACAACAGGTCTGTCATGTATTTTATCTTTATATATCTTTGTCCATTATTATGGGACCACTGAAAGGGACCTCTTCTAAAATGCTTTGATTTATAATATATAATAATTAGCACAGGTTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088140_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.128
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATACAATGGAGCGGAGGC
R:
AGATGGAAGTGTGGTTTGTAAAGT
Band lengths:
179-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]