GgaEX1029145 @ galGal4
Exon Skipping
Gene
ENSGALG00000002681 | HSD17B7
Description
3-keto-steroid reductase isoform 1 [Source:RefSeq peptide;Acc:NP_001264435]
Coordinates
chr8:3787878-3790007:-
Coord C1 exon
chr8:3789951-3790007
Coord A exon
chr8:3789388-3789486
Coord C2 exon
chr8:3787878-3788870
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTCTGTGCTGTTCTCCCTAGGTG
3' ss Score
13.13
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
Exon sequences
Seq C1 exon
ATCCGTTTCTTTGCCAAGACTTACACTCTGACACCGTATAATGGAGCAGAAGCTCAC
Seq A exon
GTGTGGCTGTTCAAGCAGAAGCCAGAATACCTGGATCCACTTGTCAAGTACCACAGCTGTACCTCCGGGCTGGGGAAGAACTTCGTGGAGCCTAGAAAG
Seq C2 exon
CTTGACGTGGATGAAGAAACTGCTGAGAAATTCTACCAGAAGCTGCTGGAACTGGAGGGGCAAACTCTAGAGAAATACGGCGATCTCCTAGATTAAATAAAGCTCAGTCTCAGTCAGTGAAGGCTTCTATCAGTAACGTGGGCTTCCTTTGTTCTGGTGCTACTTGGGGTGCCTGCTGTTCTGTGGGCTCGTGGCTTCAGCACTGATCTTCCTTCTCTGCAGAAGGTGAGCAGCTCCTGGAAACGGAGATGTGAGAACTGAAGGAAAAAAATATTTTAGTCTTTCTGCTATGGGATTTTTCTGGCACAAAACTGGATTGCTGGTGGAGGTGGGACCTGTCCTAAGGCGGCTGCGAGGCGTTGCCTTCTACAAACATGACTGAGCTGTGTGCAGCTCAAGAGGAGCCTCAAAGCGTGGTGTGAATGTGGCTTGGTGCAGGGAAGGCAACAGCCCCGGGGTGCTGCTGTGAGCTGTGGCTCCACCAGTCCTTCGAGATGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002681_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCGTATAATGGAGCAGAAGC
R:
CAGAACAAAGGAAGCCCACGT
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]