BtaEX0017487 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016451 | HSPA14
Description
Bos taurus heat shock 70kDa protein 14 (HSPA14), mRNA. [Source:RefSeq mRNA;Acc:NM_001046388]
Coordinates
chr13:29790930-29793999:+
Coord C1 exon
chr13:29790930-29791034
Coord A exon
chr13:29792096-29792257
Coord C2 exon
chr13:29793844-29793999
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTTTTTTTTTAAGCAA
3' ss Score
8.09
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGAAGCAGCCCGAGCTGCTGGGTTTAATGTTTTGCGGTTAATCCACGAACCGTCTGCAGCTCTTTTGGCTTACGGAATTGGACAGGACTCCCCCACTGGAAAAAG
Seq A exon
CAACATTTTGGTGTTCAAACTTGGAGGAACATCCTTATCTATCAGTGTCATGGAAGTTAACAGTGGAATATACCGTGTTCTTTCAACAAACACTGATAATAACATTGGAGGTACCCACTTCACAGAAACCTTAGCACAGTACCTAGCCTCTGAGTTTCAGAG
Seq C2 exon
ATCCTTCAGACATGATGTGAGAGGAAATGCCCGCGCCATGATGAAGCTGATGAACGGTGCTGACACTGCAAAACATTCTTTGTCAACCTTGGGAAGCGCCAATTGCTTCCTTGACTCATTGTATGAAGGTCAGGATTTTGACTGCAACGTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016451_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(10.6=100)
A:
PF0001215=HSP70=FE(10.7=100)
C2:
PF0001215=HSP70=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGCTGCTGGGTTTAATGT
R:
GGACACGTTGCAGTCAAAATCC
Band lengths:
250-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development