DreEX0038332 @ danRer10
Exon Skipping
Gene
ENSDARG00000058030 | hspa14
Description
heat shock protein 14 [Source:ZFIN;Acc:ZDB-GENE-041210-73]
Coordinates
chr4:9594183-9596273:+
Coord C1 exon
chr4:9594183-9594287
Coord A exon
chr4:9595632-9595793
Coord C2 exon
chr4:9596118-9596273
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTTTACATCTTCCATCACAGTCA
3' ss Score
7.72
5' ss Seq
GAAGTCAGT
5' ss Score
1.02
Exon sequences
Seq C1 exon
GCAAGCTGCAGAAAGTGCCGGCTTCAATGTGTTACGGCTGATTCACGAACCCTCCGCTGCTCTTCTAGCTTACGACATCGGCCAGGACTCACCGCTGGGGAAAAG
Seq A exon
TCATGTTCTGGTGTATAAACTGGGAGGCACATCCCTCAGCGTCACCGTGCTGGAGGTGAACAGCGGAGTTTACCGTGTTCTCGCCACACAGACGGACCACCAGACTGGAGGAGAGAGCTTCACACAGGAGCTAGCTCAACACCTCGCCGCAGAGTTTAAGAA
Seq C2 exon
GACTTTTAAGCAGGATGTGAGTGGTAACGCGCGGGCGATGATGAAGCTGATGAACAGCGCGGATGTGGCCAAACACACACTCTCAACGCTAGGCAGCGCAAACTGTTTCGTGGACTCGCTTTACGATGGCATGGACTTTGAGTGCAATGTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058030-'6-9,'6-8,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.011
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(7.0=100)
A:
PF0001215=HSP70=FE(10.8=100),PF0029717=Ribosomal_L3=PU(58.6=92.7)
C2:
PF0001215=HSP70=FE(10.4=100),PF0029717=Ribosomal_L3=PD(40.2=66.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGTGCCGGCTTCAATGT
R:
TTGCACTCAAAGTCCATGCCA
Band lengths:
243-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]