RnoEX6054135 @ rn6
Exon Skipping
Gene
ENSRNOG00000015212 | Hspa14
Description
heat shock protein family A, member 14 [Source:RGD Symbol;Acc:1303296]
Coordinates
chr17:78747384-78749894:+
Coord C1 exon
chr17:78747384-78747488
Coord A exon
chr17:78748751-78748912
Coord C2 exon
chr17:78749739-78749894
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCTCTCTCTTGAAGCAA
3' ss Score
10.27
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGAGGCAGCTGGAGCCGCCGGGTTTAATGTGTTGCGACTAATACATGAGCCGTCTGCAGCTCTCCTGGCCTATGGAATTGGACAAGACTGCCCTACCGGGAAGAG
Seq A exon
CAATGTTTTGGTGTTTAAGCTGGGAGGAACATCCTTGTCGCTCAGTATCATGGAAGTGAACAGCGGGATGTATCGGGTTCTTTCCACAAACACCAGTGACAACATCGGGGGTGTGCATTTCACAGACAGCTTAGCTCAGTACCTGGCTTCGGAGTTCCAGAG
Seq C2 exon
GCTGTTCAAGCACGATGTGAGAGGAAGTGCCCGGGCCATGATGAAGCTGATGAACAGCGCTGAGGTGGCCAAGCACTCCCTGTCCACCCTGGGAAGTGCCAATTGCTTCGTGGACTCCTTGTATGAAGGTCAAGACTTCGACTGCAATGTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015212-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(6.9=100)
A:
PF0001215=HSP70=FE(10.7=100)
C2:
PF0001215=HSP70=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGTTTAATGTGTTGCGAC
R:
TGGACACATTGCAGTCGAAGT
Band lengths:
243-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]