MmuEX6098719 @ mm10
Exon Skipping
Gene
ENSMUSG00000109865 | Hspa14
Description
heat shock protein 14 [Source:MGI Symbol;Acc:MGI:1354164]
Coordinates
chr2:3496564-3499311:-
Coord C1 exon
chr2:3499207-3499311
Coord A exon
chr2:3498022-3498183
Coord C2 exon
chr2:3496564-3496719
Length
162 bp
Sequences
Splice sites
3' ss Seq
CATTTTTTTCTCTCTTGAAGCAA
3' ss Score
8.84
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGAGGCGGCTGGAGCTGCTGGATTTAACGTGCTGCGGCTGATCCATGAGCCGTCTGCAGCTCTCCTTGCTTATGGGATTGGACAAGACCACCCTACCGGGAAGAG
Seq A exon
CAATGTTTTGGTGTTTAAGCTTGGAGGAACGTCCTTATCGCTCAGTGTCATGGAAGTTAACAGTGGGATGTATCGGGTCCTTTCCACAAACACCAGTGACAACATAGGGGGCGCACATTTCACAGACACCTTAGCACAGTACCTGGCTTCGGAGTTCCAGAG
Seq C2 exon
GTTGTTCAAACATGATGTGAGAGGAAATGCCCGAGCCATGATGAAATTGATGAACAGCGCTGAAGTGGCCAAGCATTCTCTGTCAACCTTGGGAAGTGCCAACTGCTTTGTAGATTCCTTGTATGAAGGTCAAGACTTTGATTGCAATGTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000109865-'16-13,'16-8,18-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(6.9=100)
A:
PF0001215=HSP70=FE(10.7=100)
C2:
PF0001215=HSP70=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGAGCTGCTGGATTTAA
R:
TGGACACATTGCAATCAAAGTCT
Band lengths:
254-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types