HsaEX6087613 @ hg38
Exon Skipping
Gene
ENSG00000187522 | HSPA14
Description
heat shock protein family A (Hsp70) member 14 [Source:HGNC Symbol;Acc:HGNC:29526]
Coordinates
chr10:14849721-14854280:+
Coord C1 exon
chr10:14849721-14849811
Coord A exon
chr10:14852370-14852531
Coord C2 exon
chr10:14854125-14854280
Length
162 bp
Sequences
Splice sites
3' ss Seq
TACTTTATCTTCTCTTGAAGCAA
3' ss Score
6.73
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AAACGGCACATTCTGTATTGGGCTCAGATGCAAATGATGTAGTTATTACTGTCCCGTTTGATTTTGGAGAAAAGCAAAAAAATGCTCTTGG
Seq A exon
CAATATTTTGGTGTTTAAGCTTGGAGGAACATCCTTATCTCTCAGCGTCATGGAAGTTAACAGTGGAATATATCGGGTTCTTTCAACAAACACTGATGATAACATCGGTGGTGCACATTTCACAGAAACCTTAGCACAGTATCTAGCTTCTGAGTTCCAAAG
Seq C2 exon
ATCCTTCAAACATGATGTGAGAGGAAATGCGCGAGCCATGATGAAATTAACGAACAGTGCTGAAGTAGCGAAACATTCTTTGTCAACCTTGGGAAGTGCCAACTGTTTTCTTGACTCATTATATGAAGGTCAAGATTTTGATTGCAATGTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187522_MULTIEX2-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(5.9=100)
A:
PF0001215=HSP70=FE(10.7=100)
C2:
PF0001215=HSP70=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCACATTCTGTATTGGGCT
R:
TGGACACATTGCAATCAAAATCT
Band lengths:
243-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains