BtaEX0018039 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040076 | ILF3
Description
interleukin enhancer binding factor 3, 90kDa [Source:HGNC Symbol;Acc:HGNC:6038]
Coordinates
chr7:16360914-16376478:+
Coord C1 exon
chr7:16360914-16364030
Coord A exon
chr7:16375601-16375700
Coord C2 exon
chr7:16376249-16376478
Length
100 bp
Sequences
Splice sites
3' ss Seq
AAGATTTTCTGATCTTATAGATA
3' ss Score
6.31
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GGTAAAGGCCTTATCAAAAACCGCCATTGAAAAAAAGAGCGCCGGTACTGTCACATGACTCAGGCCTACCAATCAGACAAGGTAAAGGCACAAAAGTCCTTGTCACGTGGCCAAGGAGAACTCTGAATTTGCCACTGTCACATGATCAAGCAGAGGCATGGAAAGGGGCAGGGGAACCGGTCCGACGCCACGTAACAGCTACGTTTCTGACACGTGACTAGGGCCCTCACTGTCTTTGTCCCTCCTTCCCTTTCCGGCTGGGCCTGCGTCGAGCGGCAACGCAGCGGCGAAGGGGCGGGGCTCCGGCCGGTCACGTGCTCTCGCACCTCCCCGGCGCGCGCCCGCCCGCTCGCCCCCGGCCCCGGCTCCTCCTCCTCCTCTTCTCGCCATTGCAGTTGGACTCAGCAGCCCGGTGCGCACCGCGTGGCTTTTGGGGGGAGACCCCGGTGGGCTCTGGCAGGAGGGCGGCGGTTGCGGTCGGAGAAGGGGACGCGGACGAG
Seq A exon
ATAGTTGAAGTATTGATAACAGCAAGGAAATCTGTCACAATTTGAAAAGATAAGCAAAAATTTGATTTCCAGACACTGCAGATAAAGTGAAGTAAAAATG
Seq C2 exon
CGTCCAGTGAGAATTTTTGTGAATGATGATCGCCATGTGATGGCAAAGCACTCTTCCGTTTACCCAACACAAGAGGAGCTGGAGGCAGTCCAGAACATGGTGTCCCACACAGAGCGGGCTCTCAAAGCTGTGTCTGACTGGATCGATGAGCAAGAGAAAGGCAGCAGCGACCATGCCGAGTCTGAGAATGTGGATGTGCCTGCGGAAGACGAGGGCAAAGAAGGGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040076_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.649
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCAGTTGGACTCAGCAGC
R:
TCGATCCAGTCAGACACAGCT
Band lengths:
258-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development