RnoEX6034854 @ rn6
Exon Skipping
Gene
ENSRNOG00000022741 | Ilf3
Description
interleukin enhancer binding factor 3 [Source:RGD Symbol;Acc:619734]
Coordinates
chr8:22402890-22424540:+
Coord C1 exon
chr8:22402890-22403089
Coord A exon
chr8:22423470-22423567
Coord C2 exon
chr8:22424311-22424540
Length
98 bp
Sequences
Splice sites
3' ss Seq
AAGGTTTTCTGATCTTATAGATA
3' ss Score
6.56
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GGCCCTGCACCTCCCCGGCGCGCGCCCGCCCGCTCGCTCGCCCCCGGCTCCTCCTCCTCTTCTCGCCATTGCAGTTGGGACTGAAGCAGCCCCGGCGAAAACCGCGTGGCTCTTTTTTTGAAGGGGGTTGTGAAGACTCCGGAAGGCTGGTGGCAGGAGGGTGGCGGCGGCGCCTGAGGACGAAGGACGGGAACGCCAAG
Seq A exon
ATAGTTGAAGTATTGGTAACACCAAGGAACTGTCACAATTTGAAAAGATAAGCCAAGGCTGATTTCCAGACACTACAGGAAAAAAGGAGGGGAAAATG
Seq C2 exon
CGTCCCATGAGAATTTTTGTGAATGATGATCGCCATGTGATGGCAAAGCATTCTTCAGTATACCCAACACAAGAGGAGCTGGAGGCTGTACAGAACATGGTGTCCCACACTGAGCGGGCCCTCAAGGCTGTCTCTGACTGGATTGATGAGCAGGAGAAAGGCAACAGCGAGCTCTCTGAAGCAGAAAATATGGACACACCCCCAGATGATGAGAGCAAAGAAGGGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022741-'0-14,'0-7,10-14=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.657
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTGTGAAGACTCCGGAAG
R:
ATGTTCTGTACAGCCTCCAGC
Band lengths:
174-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]