HsaEX6092919 @ hg19
Exon Skipping
Gene
ENSG00000129351 | ILF3
Description
interleukin enhancer binding factor 3, 90kDa [Source:HGNC Symbol;Acc:6038]
Coordinates
chr19:10764937-10781879:+
Coord C1 exon
chr19:10764937-10765163
Coord A exon
chr19:10781192-10781284
Coord C2 exon
chr19:10781650-10781879
Length
93 bp
Sequences
Splice sites
3' ss Seq
AAGATTTTCTGATCTTATAGAGT
3' ss Score
5.41
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
AAAGGGGGCGGGGCTTCAGCCGGTCACGTGTTCCCGCACCTCCCCGGCGCGCGCCTGCCCGCCCGCCCGCTCGCCCCCGGTCCGGACTCCTCCTCCTCCTCTTCTCGCCATTGCAGTTGGACCCAGCAGCCCGGCGCGCACCGCGTGGCTTTTGGGGGCAGACCCCGGCGGGCTGTGGCAGGAGGGCGGCGGCGGCGGCTGCGGTCGAAGAAGGGGACGCCGACAAG
Seq A exon
AGTTGAAGTATTGATAACACCAAGGAACTCTATCACAATTTGAAAAGATAAGCAAAAGTTTGATTTCCAGACACTACAGAAGAAGTAAAAATG
Seq C2 exon
CGTCCAATGCGAATTTTTGTGAATGATGACCGCCATGTGATGGCAAAGCATTCTTCCGTTTATCCAACACAAGAGGAGCTGGAGGCAGTCCAGAACATGGTGTCCCACACGGAGCGGGCGCTCAAAGCTGTGTCCGACTGGATAGACGAGCAGGAAAAGGGTAGCAGCGAGCAGGCAGAGTCCGATAACATGGATGTGCCCCCAGAGGACGACAGTAAAGAAGGGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000129351-'0-3,'0-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.740
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0050214=Phycobilisome=PU(77.4=84.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTTCTCGCCATTGCAGTT
R:
CCATCACATGGCGGTCATCAT
Band lengths:
173-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)