Special

MmuEX0024054 @ mm9

Exon Skipping

Gene
ENSMUSG00000032178 | Ilf3
Description
interleukin enhancer binding factor 3 [Source:MGI Symbol;Acc:MGI:1339973]
Coordinates
chr9:21172387-21193197:+
Coord C1 exon
chr9:21172387-21172543
Coord A exon
chr9:21192144-21192241
Coord C2 exon
chr9:21192968-21193197
Length
98 bp
Sequences
Splice sites
3' ss Seq
AAGGTTTTCTGATCTTATAGATA
3' ss Score
6.56
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
CTCCTCCTTTTCTCGCCATTGCAGTTGGGACTGAAGCAGCCCCGGCGAAAACCGCGTGGCTTTTTTTTTTTTTTTTGAGGGGGGTTGTGAAGACTCCGGAAGGCTCGTGGCAGGAGGGCGGCGGCGCCTGAAGGCGAAGGACGGGAACACCGGCAAG
Seq A exon
ATAGTTGAAGTATTGGTAACACCAAGGAACTGTCACAATTTGAAAAGATAAGCCAAGACTGATTTCCAGACACTACAAGAAAAAAGGAGGGGAAAATG
Seq C2 exon
CGTCCCATGAGAATTTTTGTGAATGATGATCGCCACGTGATGGCAAAGCATTCTTCAGTGTACCCAACACAAGAGGAGCTGGAGGCTGTACAGAACATGGTGTCCCATACTGAGCGGGCCCTGAAGGCTGTCTCTGACTGGATTGATGAGCAGGAGAAAGGCAACAGCGAGCTCTCTGAGGCAGAAAATATGGACACACCCCCAGACGATGAGAGCAAAGAAGGGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032178-'0-7,'0-3,7-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=0.000 C2=0.669
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000065770





     
                   









    
Main Skipping Isoform:
ENSMUSP00000111073





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000111074
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr19:10781192-10781284 
HIGH PSI
HsaEX6092919
(ILF3)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr7:16375605-16375700 
ALTERNATIVE
BtaEX0018039
(ILF3)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr3:13698380-13698455 
HIGH PSI
DreEX0039199
(ilf3b)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GGGTTGTGAAGACTCCGGAAG

				
R: 
ATGTTCTGTACAGCCTCCAGC

				
Band lengths: 
174-272

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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