MmuEX0024054 @ mm10
Exon Skipping
Gene
ENSMUSG00000032178 | Ilf3
Description
interleukin enhancer binding factor 3 [Source:MGI Symbol;Acc:MGI:1339973]
Coordinates
chr9:21367871-21392442:+
Coord C1 exon
chr9:21367871-21368099
Coord A exon
chr9:21387700-21387797
Coord C2 exon
chr9:21392295-21392442
Length
98 bp
Sequences
Splice sites
3' ss Seq
AAGGTTTTCTGATCTTATAGATA
3' ss Score
6.56
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AGTCACGTGGCCCTGCACCTCCCCGGCGCGCGCCCGCCCGCCCGCTCGCTCGCCCCCGGTCCCCGGCTCCTCCTCCTCCTTTTCTCGCCATTGCAGTTGGGACTGAAGCAGCCCCGGCGAAAACCGCGTGGCTTTTTTTTTTTTTTTTGAGGGGGGTTGTGAAGACTCCGGAAGGCTCGTGGCAGGAGGGCGGCGGCGCCTGAAGGCGAAGGACGGGAACACCGGCAAG
Seq A exon
ATAGTTGAAGTATTGGTAACACCAAGGAACTGTCACAATTTGAAAAGATAAGCCAAGACTGATTTCCAGACACTACAAGAAAAAAGGAGGGGAAAATG
Seq C2 exon
ACTGTAACAGAAGACAAGTATGAAATACTCCAGTCTGTGGATGATGCTGCGATTGTGATAAAAAACACAAAAGAGCCCCCCTTGTCCTTGACCATCCATCTGACCTCCCCTGTTGTCAGAGAAGAAATGGAGAAAGTATTAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032178_MULTIEX1-1/9=C1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF075289=DZF=PD(35.7=92.6)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTGTGAAGACTCCGGAAG
R:
TGGATGGTCAAGGACAAGGGG
Band lengths:
174-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types