DreEX0039199 @ danRer10
Exon Skipping
Gene
ENSDARG00000105177 | ilf3b
Description
interleukin enhancer binding factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-587]
Coordinates
chr3:13692708-13700072:+
Coord C1 exon
chr3:13692708-13692786
Coord A exon
chr3:13698380-13698455
Coord C2 exon
chr3:13699843-13700072
Length
76 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTTTCCATTACAGACC
3' ss Score
11.24
5' ss Seq
ATGGTAAAC
5' ss Score
4.68
Exon sequences
Seq C1 exon
TGTTGCGGCTCCAGTTTAGCGCACGCTGATTCTCCACAGCGGCAGAGCAGTAGACGGGCGCATCTTCGTCGCTGTATTG
Seq A exon
ACCAACTGGAGCAGCTTTCCTCTGCCACATATAGACCTACACTGCCAAACTGAAGACTTACTTTGTACCCATTATG
Seq C2 exon
CCTCCTCCTCTTCGTCATCGCTCCATGCGCATCTTTGTGAACGACGACCGCCATGTGATGGCCAAACACTCGGCCATCTATCCCACCCAGGAGGAGCTGGAGGGGGTGCAGAACATGGTGTCCCACACAGAGCGTGCTCTCAAGCTTGTGTCTGATTGGCTGGATGACCAGGAGAAGGGAAATGCCAAAGTAAATGCATTGGACACAGATGGAGAAGGGGATAAGGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105177-'0-5,'0-4,1-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.506
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGCGGCTCCAGTTTAGC
R:
CCTCCTGGGTGGGATAGATGG
Band lengths:
173-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]