BtaEX0018488 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019498 | ITGA3
Description
Integrin alpha-3 Integrin alpha-3 heavy chain Integrin alpha-3 light chain [Source:UniProtKB/Swiss-Prot;Acc:F1MMS9]
Coordinates
chr19:37215432-37218354:-
Coord C1 exon
chr19:37218158-37218354
Coord A exon
chr19:37215694-37215782
Coord C2 exon
chr19:37215432-37215568
Length
89 bp
Sequences
Splice sites
3' ss Seq
GAACTATCTCTCTTTCCCAGACA
3' ss Score
8.66
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGGCAGGACCTCCTGGTGGGTGCCCCCTATTACTTTGAGCGGAAAGAGGAAGTAGGGGGTGCGATTTATATCTTCATGAACCAGGCAGGCACCTCCTTCCCAGACCACCCCTCCCTCCTTCTTCATGGCCCCAGTCGCTCCGCCTTCGGCTTCTCTGTGGCAAGCATTGGTGACGTCAACCAAGACGGATTCCAGG
Seq A exon
ACATTGCTGTGGGAGCCCCATTCGAGGGCTTGGGCAAAGTGTACATCTACCATGGCAGCTCCAGGGGGCTCCTCAGACAGCCCCAGCAG
Seq C2 exon
GTAATCCATGGAGAGCAGCTGGGACTGCCTGGCTTGGCCACCTTTGGCTACTCCCTGAGTGGGCAGATGGACGTGGATGAGAACTTCTACCCAGACCTGCTGGTGGGGAGCCTGTCAGACCGCATCGTGCTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019498_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183918=FG-GAP=PD(64.1=37.3)
A:
PF135171=VCBS=PD(4.0=10.0)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCTCCCTCCTTCTTCATG
R:
TTCTCATCCACGTCCATCTGC
Band lengths:
173-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development