RnoEX6049287 @ rn6
Exon Skipping
Gene
ENSRNOG00000004276 | Itga3
Description
integrin subunit alpha 3 [Source:RGD Symbol;Acc:1310333]
Coordinates
chr10:82871865-82873784:-
Coord C1 exon
chr10:82873588-82873784
Coord A exon
chr10:82872103-82872191
Coord C2 exon
chr10:82871865-82872001
Length
89 bp
Sequences
Splice sites
3' ss Seq
GTCCTGTCTCTCCTCCTCAGACA
3' ss Score
10.19
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTGGCAGGACCTCCTGGTGGGTGCTCCCTACTACTTCGAACGGAAAGAGGAGGTAGGGGGTGCCGTCTATGTCTTCATGAACCAGGCGGGAACGTCCTTCCCTGATCAGCCTTCCCTCCTGCTCCATGGCCCCAGTCGCTCTGCCTTTGGCATCTCTGTAGCCAGCATTGGTGACATCAACCAGGATGGATTCCAGG
Seq A exon
ACATTGCTGTGGGAGCTCCATTTGAGGGCTTGGGCAAAGTATACATCTACCACAGCAGCTCCGGGGGGCTCCTCAAGCAGCCTCAGCAG
Seq C2 exon
ATAATCCACGGAGAGACACTAGGACTGCCTGGCTTGGCCACCTTCGGCTACTCTCTGAGTGGGAAGATGGATGTGGATGAAAACTTATACCCAGACCTGCTAGTAGGGAGCCTGTCGGACCACATTGTGCTGCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004276-'9-12,'9-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135171=VCBS=FE(88.0=100)
A:
PF135171=VCBS=PD(4.0=10.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCCCTGATCAGCCTTCC
R:
TTCCCACTCAGAGAGTAGCCG
Band lengths:
168-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]