HsaEX6023462 @ hg38
Exon Skipping
Gene
ENSG00000005884 | ITGA3
Description
integrin subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:6139]
Coordinates
chr17:50071986-50074280:+
Coord C1 exon
chr17:50071986-50072182
Coord A exon
chr17:50073916-50074004
Coord C2 exon
chr17:50074144-50074280
Length
89 bp
Sequences
Splice sites
3' ss Seq
TCTTGCCTTTTCTTCTGCAGATA
3' ss Score
12.91
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGGCAGGACCTCCTGGTGGGCGCCCCCTACTACTTCGAGAGGAAAGAGGAAGTAGGGGGTGCCATCTATGTCTTCATGAACCAGGCGGGAACCTCCTTCCCTGCTCACCCCTCACTCCTTCTTCATGGCCCCAGTGGCTCTGCCTTTGGTTTATCTGTGGCCAGCATTGGTGACATCAACCAGGATGGATTTCAGG
Seq A exon
ATATTGCTGTGGGAGCTCCGTTTGAAGGCTTGGGCAAAGTGTACATCTATCACAGTAGCTCTAAGGGGCTCCTTAGACAGCCCCAGCAG
Seq C2 exon
GTAATCCATGGAGAGAAGCTGGGACTGCCTGGGTTGGCCACCTTCGGCTATTCCCTCAGTGGGCAGATGGATGTGGATGAGAACTTCTACCCAGACCTTCTAGTGGGAAGCCTGTCAGACCACATTGTGCTGCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005884-'24-27,'24-26,27-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135171=VCBS=FE(88.0=100)
A:
PF0183918=FG-GAP=PD(70.8=54.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCTGTGGCCAGCATTGGTG
R:
CAGCAGCACAATGTGGTCTGA
Band lengths:
180-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains