MmuEX6089027 @ mm9
Exon Skipping
Gene
ENSMUSG00000001507 | Itga3
Description
integrin alpha 3 [Source:MGI Symbol;Acc:MGI:96602]
Coordinates
chr11:94920870-94923388:-
Coord C1 exon
chr11:94923192-94923388
Coord A exon
chr11:94921093-94921181
Coord C2 exon
chr11:94920870-94921006
Length
89 bp
Sequences
Splice sites
3' ss Seq
GCCCTGTCTCTCCTCCCCAGACA
3' ss Score
11.24
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTGGCAGGACCTCCTGGTGGGTGCTCCCTACTACTTCGAACGGAAAGAGGAGGTAGGGGGTGCCGTCTATGTCTTCATGAACCAGGCGGGCGCATCCTTCCCTGATCAACCTTCCCTCCTGCTTCACGGCCCCAGCCGCTCTGCCTTTGGCATCTCTATAGCCAGCATCGGTGACATCAACCAGGATGGATTCCAGG
Seq A exon
ACATCGCTGTGGGAGCCCCATTTGAGGGCTTGGGCAAAGTCTACATCTACCACAGCAGCTCCGGGGGGCTCCTCAGGCAGCCCCAGCAG
Seq C2 exon
ATAATCCATGGAGAGAAACTCGGACTGCCAGGCTTGGCCACCTTCGGCTACTCCCTGAGCGGGAAGATGGATGTGGATGAAAACCTTTACCCAGACCTGCTAGTAGGGAGCCTGTCGGACCACATCGTGCTGCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001507-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135171=VCBS=FE(88.0=100)
A:
PF135171=VCBS=PD(4.0=10.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACCTTCCCTCCTGCTTCA
R:
CATCCACATCCATCTTCCCGC
Band lengths:
171-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: