DreEX6067735 @ danRer10
Exon Skipping
Gene
ENSDARG00000012824 | itga3b
Description
integrin, alpha 3b [Source:ZFIN;Acc:ZDB-GENE-050411-55]
Coordinates
chr12:5578301-5580301:-
Coord C1 exon
chr12:5580108-5580301
Coord A exon
chr12:5578586-5578674
Coord C2 exon
chr12:5578301-5578437
Length
89 bp
Sequences
Splice sites
3' ss Seq
GTTTTGGTTTCTTCATTCAGATA
3' ss Score
8.39
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
TTGGAATGACCTGATCGTCGGCGCGCCATTTTATTTCGACCGCTATAAGGAGGAAGGAGGTGCTGTTTACATTTTTATGAACGAAAACGGATCCTTCCAGAAAAAAGCCAGCCTGGTTCTGAAGGGTAAAAAGGGATCTGGGTTTGGGTTTGCCGTTGCTGCGGTCGGAGATGTCAATCAGGACGGATTTCAAG
Seq A exon
ATATTGCTGTCGGCGCTCCATTCCAGGACTCTGGAAAAGTCTACATATGGATGGGAAGTAAAAGTGGAATAACTAAAGAACCAAGCCAG
Seq C2 exon
GTGATCGAGGGTAAGTCATTGGGTCCCAGTGGTTTTCAGACGTTTGGTTATTCTCTCAGTGGAGGAATGGATATGGATGGAAATGATTATCCAGATATTTTGGTGGGCTCTTTGGATGACCGCATCGCACTCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012824-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135171=VCBS=FE(87.8=100)
A:
PF135171=VCBS=PD(4.1=10.0)
C2:
PF0183918=FG-GAP=PU(86.1=67.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGAAGGAGGTGCTGTTT
R:
ACCACTGGGACCCAATGACTT
Band lengths:
180-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]