BtaEX0018596 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21943111-21972274:-
Coord C1 exon
chr22:21969731-21972274
Coord A exon
chr22:21968809-21968884
Coord C2 exon
chr22:21943111-21943218
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCTCAATTACTTAGGAG
3' ss Score
7.35
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TGAGTCGCGGGTTCCTAAGTCAGCGAGTTCTCGGCGCAGAGCCGGGTTTGAAGCCCGGACTCCTCGCAGGACGCCCCTCCCTGTCCCCTTGCGCGTCTATTTAGAGCCCAGCCTGGGAACCCATGGGATTCTGGGACTTGTAGTTCACCCTCGCAGCCCCAGGCGCTGCCACGACCCCGGACTCGGACTACATTGCCCAGGGAGCGTCCCGGCCTATATAAGCTGCCAGGAGCTGCTTCGAAGTGCAGTAACCATGTGGATGTGCTGCTGAAGCGTTTCCTCTAGCTCGCTGGGGTGGGAGGAGAGGAGGAGGAGGTGGTGGTGGAGGAGGAGGCAGAGGGTGGAGAGAGAGAAATCGCACGCCGAGAGGAGGTGTGGGTGTTCCGCTTCCATCCTAACGGAACGAGCTCCCTCTTCGCGGACATGGGATTACCCAGCGGCTGCTAACCCCCTCTGCTCGCCCTGCTCCGCCAAAGTGGCGTGGCTCCCCGGGCACTAAG
Seq A exon
GAGCTGACCGCCAGGGAGCAGAACTCACACCCCTGGCTGGGCGTGTTTTGGCAACAGAGGGCCTGACCTGGGTCAG
Seq C2 exon
GATTCTCAAGAAAGACATGTCTGACAAGATGTCTAGTTTCCTACACATCGGAGACATTTGTTCTCTGTACGCCGAAGGATCGACAAATGGATTTATTAGCACCTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGCGGACATGGGATTACC
R:
CGATCCTTCGGCGTACAGAGA
Band lengths:
169-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development