RnoEX0045379 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140247313-140268543:+
Coord C1 exon
chr4:140247313-140247486
Coord A exon
chr4:140248336-140248405
Coord C2 exon
chr4:140268436-140268543
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTGTAAATATTTAGGAG
3' ss Score
7.06
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AGGTGGAGGCAGGGGGTGGAGAGAGAGAAAGCGCACGCCGAGAGGAGGTGTGGGTGTTCCGCTCCCATCCTAACGGAACGAGCTCCCTCTTCGCGGACATGGGATTGCCCAGCGGCTGCTAACCCCTGTCCTGGTCCTGATCCCTCAAACCGGCGTGGCTCCCCGGTCACCAAG
Seq A exon
GAGCTGACTACAAAGGATTTGCATCCTTGGCTGGGAGTCCATTGGCTACAGAGTGCCTGACCTGGGTCAG
Seq C2 exon
GCTTTTCAACAAGGACATGTCTGACAAAATGTCTAGTTTCCTACATATCGGAGACATTTGTTCTCTGTATGCAGAGGGATCTACGAATGGATTTATCAGCACCTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'0-4,'0-1,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF087096=Ins145_P3_rec=PU(11.9=87.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCGCGGACATGGGATTG
R:
TCCATTCGTAGATCCCTCTGCA
Band lengths:
179-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]