MmuEX6006030 @ mm10
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108213096-108237085:+
Coord C1 exon
chr6:108213096-108213353
Coord A exon
chr6:108214203-108214278
Coord C2 exon
chr6:108236978-108237085
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTGTTAAATATTTAGGAG
3' ss Score
6.44
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCAGTAACCATGTGGATGTTCTGCTGAAGCGTTTCCTCAAGCCTGCCGGGGTGGGAGGAGAGGAGGAGGTGGTGGTGGTGGAGGAGGTGGAGGCAGAGGGTGGAGAGAGAGAAAGCGCACGCCGAGAGGAGGTGTGGGTGTTCCGCTCCCATCCTAACGGAACGAGCTCCCTCTTCGCGGACATGGGATTGCCCAGCGGCTGCTAACCCCTCTCCTGGTCCTGATCCCCCAAACCGGCGTGGCTCCCCGGTCACCAAG
Seq A exon
GAGCTGATTACAAGGGACCAGGATTTGCATCCTTGGCTGGGCGTCCATTGGCTACAGAGTGCCTGACCTGGGTCAG
Seq C2 exon
GCTTTCCAACACGGACATGTCTGACAAAATGTCGAGTTTCCTACATATTGGAGACATTTGTTCTCTGTATGCGGAGGGATCTACGAATGGATTTATCAGCACCTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'0-3,'0-0,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF087096=Ins145_P3_rec=PU(11.9=87.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCGCGGACATGGGATTG
R:
TCCCTCCGCATACAGAGAACA
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types