HsaEX6054170 @ hg19
Exon Skipping
Gene
ENSG00000150995 | ITPR1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:HGNC Symbol;Acc:6180]
Coordinates
chr3:4535034-4558267:+
Coord C1 exon
chr3:4535034-4535289
Coord A exon
chr3:4536115-4536190
Coord C2 exon
chr3:4558160-4558267
Length
76 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTCTAAATATTTAGGAG
3' ss Score
8.85
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AGTAACCATGTGGATGTGCTGCTGAAGCGTTTCCTCAAGCTCGCTGGGGTGGGAGGAGAGGAGGAGGAGGAGGTGGTGGTGGAGGAGGAGGCAGGGGGTGGAGAGAGAGAAAGCGCACGCCGAGAGGAGGTGTGGGTGTTCCGCTTCCATCCTAACGGAACGAGCTCCCTCTTCGCGGACATGGGATTACCCAGCGGCTGCTAACCCCTCTCCTCGCCCTGCTCCCCCAAACCGGCGTGGCTCCCCGGGCACCAAG
Seq A exon
GAGCTGACTACAGAGGAGCAGGATTTGCACCCCTCGCTGGGCTTGCTTTGGCAACAGAGTGCCTGACCCAGGTCAG
Seq C2 exon
GATTTTCAAGAAAGACATGTCTGACAAAATGTCTAGCTTCCTACATATTGGAGACATTTGTTCTCTGTACGCGGAGGGATCGACAAATGGATTTATTAGCACCTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150995-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF087096=Ins145_P3_rec=PU(11.9=87.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGCGGACATGGGATTACC
R:
GATCCCTCCGCGTACAGAGAA
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)