BtaEX0018973 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002328 | KDM2B
Description
lysine (K)-specific demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
Coordinates
chr17:55955370-56002432:+
Coord C1 exon
chr17:55955370-55955854
Coord A exon
chr17:55973104-55973190
Coord C2 exon
chr17:56002208-56002432
Length
87 bp
Sequences
Splice sites
3' ss Seq
GCTCCTTTGCTTGACTACAGAAT
3' ss Score
5.86
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATGCCCCAAGAAAGCCCAGCATAGACGGCTTCTCATCTGATTCCTGGCTGGAGATGGAGGAGGAGTCCTGTGAGCAGCAGCCCCAGGAGGAGAAGGAGGAAGAGGAGGAAGAAGAGGAAGAGGAGGAGGGTGCAGATAAGACCCCCAGAGCATCCACCGATGGCCCTGCCTCACCCACGAGCACCCCGTCCGAGGACCAGGAGGCCCCCGGGAAGAAGCCCAAAGCCCCTGCCATGCGGTTCCTCAAAAGGACTCTGTCAAACGAGTCAGAGGACAGCGTGAAGTCTGCCACGATGCCCACTGACTACCCCAAGACGCCCACCGGCTCTCCTGCCACTGAGGTCTCTGCCAAATGGACCCACCTCACCGAGTTTGAACTGAAGGGCCTGAAAGCTCTGGTGGAGAAACTTGAATCCCTCCCGGAGAACAAGAAGTGTGTCCCTGAGGGCATCGAGGACCCCCAGGCCCTCCTGGAGGGTGTGAAG
Seq A exon
AATGTCCTGAAGGAGCACGCGGAGGACGACCCCAGTCTGGCCATCACTGGGGTCCCCGTAGTCACTTGGCCAAAGAAGACTCCAAAG
Seq C2 exon
AACCGGGCGGTAGGTCGGCCCAAGGGGAAGCTGGGCCCGGCCTCCGCGGTGAAGTTGGCCGCCAACCGGACCACGGCGGGAGCTCGCCGGCGCCGGACGCGATGCCGCAAGTGCGAGGCCTGCCTGCGGACGGAGTGCGGCGAGTGCCACTTCTGCAAGGACATGAAGAAGTTCGGGGGCCCCGGGCGGATGAAGCAGAGCTGCATCATGAGGCAGTGCATCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002328-'30-20,'30-17,31-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=0.621 C2=0.227
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0200815=zf-CXXC=WD(100=62.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGGGCCTGAAAGCTCTG
R:
TTGGCGGCCAACTTCACC
Band lengths:
173-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development