RnoEX0046416 @ rn6
Exon Skipping
Gene
ENSRNOG00000025702 | Kdm2b
Description
lysine demethylase 2B [Source:RGD Symbol;Acc:1310217]
Coordinates
chr12:39092650-39142496:+
Coord C1 exon
chr12:39092650-39093122
Coord A exon
chr12:39102948-39103034
Coord C2 exon
chr12:39142272-39142496
Length
87 bp
Sequences
Splice sites
3' ss Seq
GATCCTTTGTTTGGCCACAGAAT
3' ss Score
8.05
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATGCCCCAAGAAAAAACAGTGTAGACGGTTTCTCATCTGATTCCTGGCTGGAGATGGAGGAGGAGTCCCGTGAGCAGCAGCTCCAGGAGGAGGAGGACAAGGAAGAGGAAGGGGATGGTGCAGACAAAACACCCAAGCCACCCACCGAGGGCCCCACCTCACCCACCAGCACCCAGTCGGAAGACCAGGACAGCACAGGGAAGAAGCCTAAAGCCCCTGCTATGCGATTCCTCAAGAGGACTTTGTCCAATGAGTCCGAGGAAAGTGTCAAGTCCACAGCGATGCCCGTAGACTACCCCAAGACGCCCACAGGCTCCCCGGCCACTGAGGTTTCTACCAAGTGGACTCACCTTACCGAATTTGAACTGAAGGGCTTGAAAGCCCTGGTTGAAAAACTAGAGTCTCTTCCGGAGAATAAGAAGTGTGTCCCTGAGGGAATTGAGGACCCCCAGGCCCTCCTGGAAGGTGTTAAG
Seq A exon
AATGTACTGAAGGAACACGTGGATGATGACCCCAACCTGGCCATCACCGGGGTCCCCGTGGTCAGTTGGCCAAAGAAAACTCCAAAG
Seq C2 exon
AACCGGGTGGTGGGTCGGCCTAAGGGCAAGTTGGGCCCGGCCTCAGCGGTGAAGTTGGCTGCCAACCGAACAACAGCAGGAGCTCGCAGGCGCCGGACGCGATGCCGCAAGTGCGAGGCCTGCCTGCGGACGGAGTGTGGAGAGTGCCACTTTTGCAAGGACATGAAGAAGTTCGGAGGTCCTGGGCGCATGAAGCAGAGCTGCATCATGCGGCAGTGCATCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025702-'10-14,'10-12,17-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=0.414 C2=0.213
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0200815=zf-CXXC=WD(100=62.7),PF0013017=C1_1=PU(1.9=1.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTCCTGGAAGGTGTTAAG
R:
TTGCAAAAGTGGCACTCTCCA
Band lengths:
179-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]