GgaEX0005618 @ galGal3
Exon Skipping
Gene
ENSGALG00000004225 | KDM2B
Description
NA
Coordinates
chr15:5538954-5566723:-
Coord C1 exon
chr15:5566269-5566723
Coord A exon
chr15:5558680-5558766
Coord C2 exon
chr15:5538954-5539178
Length
87 bp
Sequences
Splice sites
3' ss Seq
GACCTTTTCGTTCACAACAGAAC
3' ss Score
8.49
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATGCAAAGAGAAAACGCAGCATAGACAGCTATTCATCGGATTCGTGGTTAGACATGGATGAAGAATCTTGTGATGCTCATATCCGGGAGGAAAAGGATGACAGCTTGGATAAGAACTCCAAATCCCTGGTGGATGGCTCCTCCTCACCCAACAGCACACATTCAGAAGGAAAGGAGGGTGCAGGGAGAAAACAAAAAGCCACAGTAATGAGGTACCTAAAAAGAACTTTGTCTAATGAGTCAGATGACAGTGTAAAATCAACGACCCCCACGGATTATCCCAAAACACCAACGGGGTCTCCAGCTACAGAAGTTTCAACCAAATGGACTCACCTCACAGAATTTGAACTGAAGGGTTTAAAAGCCCTGGTGGAAAAGCTTGAATCTCTCCCAGAGAACAAGAAGTGTGTTCCAGAAGGCATTGAGGATCCACAGGCTCTCCTGGAGGACATGAAG
Seq A exon
AACATTCTGAAAGAACATGCTGATGATGACCAAAATCTTGCGATTTCGGGTGTCCCTGTGGTCAGCTGGCCCAAGAAGACCCCAAAG
Seq C2 exon
AACAGGGCGGTGGGACGGCCCAAAGGGAAGCTGGGCGCTGCCTCTGCGGTGAAGCTCGCAGCTAACCGGACCACGGCCGGAGCACGCCGGAGGAGGACGCGATGCCGCAAGTGCGAGGCGTGCCTGCGGACAGAGTGCGGCGAGTGTCACTTCTGCAAAGACATGAAGAAGTTTGGGGGGCCTGGCAGGATGAAACAGTCCTGCATTATGAGGCAGTGTATCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004225_MULTIEX3-1/6=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.586 A=0.483 C2=0.160
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0200815=zf-CXXC=WD(100=62.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTCCTGGAGGACATGAA
R:
TTTGCAGAAGTGACACTCGCC
Band lengths:
181-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]