GgaEX0005618 @ galGal4
Exon Skipping
Gene
ENSGALG00000004225 | KDM2B
Description
lysine (K)-specific demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
Coordinates
chr15:5486348-5513769:-
Coord C1 exon
chr15:5513315-5513769
Coord A exon
chr15:5505727-5505813
Coord C2 exon
chr15:5486348-5486572
Length
87 bp
Sequences
Splice sites
3' ss Seq
GACCTTTTCGTTCACAACAGAAC
3' ss Score
8.49
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATGCAAAGAGAAAACGCAGCATAGACAGCTATTCATCGGATTCGTGGTTAGACATGGATGAAGAATCTTGTGATGCTCATATCCGGGAGGAAAAGGATGACAGCTTGGATAAGAACTCCAAATCCCTGGTGGATGGCTCCTCCTCACCCAACAGCACACATTCAGAAGGAAAGGAGGGTGCAGGGAGAAAACAAAAAGCCACAGTAATGAGGTACCTAAAAAGAACTTTGTCTAATGAGTCAGATGACAGTGTAAAATCAACGACCCCCACGGATTATCCCAAAACACCAACGGGGTCTCCAGCTACAGAAGTTTCAACCAAATGGACTCACCTCACAGAATTTGAACTGAAGGGTTTAAAAGCCCTGGTGGAAAAGCTTGAATCTCTCCCAGAGAACAAGAAGTGTGTTCCAGAAGGCATTGAGGATCCACAGGCTCTCCTGGAGGACATGAAG
Seq A exon
AACATTCTGAAAGAACATGCTGATGATGACCAAAATCTTGCGATTTCGGGTGTCCCTGTGGTCAGCTGGCCCAAGAAGACCCCAAAG
Seq C2 exon
AACAGGGCGGTGGGACGGCCCAAAGGGAAGCTGGGCGCTGCCTCTGCGGTGAAGCTCGCAGCTAACCGGACCACGGCCGGAGCACGCCGGAGGAGGACGCGATGCCGCAAGTGCGAGGCGTGCCTGCGGACAGAGTGCGGCGAGTGTCACTTCTGCAAAGACATGAAGAAGTTTGGGGGGCCTGGCAGGATGAAACAGTCCTGCATTATGAGGCAGTGTATCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004225_MULTIEX1-5/13=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.586 A=0.483 C2=0.160
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0200815=zf-CXXC=WD(100=62.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTCCTGGAGGACATGAA
R:
TTTGCAGAAGTGACACTCGCC
Band lengths:
181-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]