BtaEX0019507 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002280 | KIF5B
Description
kinesin family member 5B [Source:HGNC Symbol;Acc:HGNC:6324]
Coordinates
chr13:33637220-33638981:+
Coord C1 exon
chr13:33637220-33637307
Coord A exon
chr13:33637447-33637571
Coord C2 exon
chr13:33638877-33638981
Length
125 bp
Sequences
Splice sites
3' ss Seq
GTTGTGTGATTTCTTTGTAGATA
3' ss Score
7.81
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GGATGTACAGAGCGTTTTGTATGTAGTCCAGATGAAGTTATGGACACCATAGATGAAGGAAAATCTAACAGACATGTAGCAGTTACAA
Seq A exon
ATATGAATGAACATAGCTCTAGGAGTCACAGTATATTTCTTATTAATGTAAAACAAGAGAACACGCAAACGGAACAAAAGCTGAGTGGAAAACTTTATCTGGTGGATTTAGCTGGTAGTGAAAAG
Seq C2 exon
GTTAGTAAAACTGGTGCTGAAGGTGCTGTGCTGGATGAAGCTAAGAACATCAACAAGTCCCTTTCTGCTCTTGGAAATGTCATTTCTGCTTTGGCTGAGGGTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002280_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.048 C2=0.029
Domain overlap (PFAM):
C1:
PF0022518=Kinesin=FE(9.3=100)
A:
PF0022518=Kinesin=FE(13.1=100)
C2:
PF0022518=Kinesin=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGCGTTTTGTATGTAGTCCA
R:
ACTACCCTCAGCCAAAGCAGA
Band lengths:
187-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development