DreEX6070701 @ danRer10
Exon Skipping
Gene
ENSDARG00000103394 | kif5bb
Description
kinesin family member 5B, b [Source:ZFIN;Acc:ZDB-GENE-070629-4]
Coordinates
chr12:41035638-41036263:+
Coord C1 exon
chr12:41035638-41035725
Coord A exon
chr12:41035876-41036000
Coord C2 exon
chr12:41036159-41036263
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTCCCGGTGTGGTGTGTCAGACA
3' ss Score
4.13
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GGCTGCACTGAACGGTTTGTTTGTAGCCCGGAGGAAGTGATGGACACCATAGATGAAGGCAAATCCAACAGACATGTGGCTGTCACAA
Seq A exon
ACATGAACGAGCACAGCTCCAGGAGTCACAGTATCTTCCTGATAAACGTCAAGCAAGAAAACACTCAGACAGAGCAGAAACTGAGCGGGAAACTCTACCTGGTGGATTTAGCTGGAAGCGAGAAG
Seq C2 exon
GTCAGTAAAACCGGAGCAGAGGGCGCTGTGTTGGATGAAGCCAAAAACATTAACAAATCTCTTTCCGCTCTGGGCAACGTCATCTCAGCTCTGGCTGAAGCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103394-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=0.048 C2=0.029
Domain overlap (PFAM):
C1:
PF0022518=Kinesin=FE(9.3=100)
A:
PF0022518=Kinesin=FE(13.1=100)
C2:
PF0022518=Kinesin=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCACTGAACGGTTTGTTT
R:
CGTTGCTTCAGCCAGAGC
Band lengths:
192-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]