HsaEX6088059 @ hg19
Exon Skipping
Gene
ENSG00000170759 | KIF5B
Description
kinesin family member 5B [Source:HGNC Symbol;Acc:6324]
Coordinates
chr10:32324818-32326535:-
Coord C1 exon
chr10:32326448-32326535
Coord A exon
chr10:32326182-32326306
Coord C2 exon
chr10:32324818-32324922
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTAATTTCCTTGCAGATA
3' ss Score
10.31
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GGGTGCACAGAGCGTTTTGTATGTAGTCCAGATGAAGTTATGGATACCATAGATGAAGGAAAATCCAACAGACATGTAGCAGTTACAA
Seq A exon
ATATGAATGAACATAGCTCTAGGAGTCACAGTATATTTCTTATTAATGTCAAACAAGAGAACACACAAACGGAACAAAAGCTGAGTGGAAAACTTTATCTGGTTGATTTAGCTGGTAGTGAAAAG
Seq C2 exon
GTTAGTAAAACTGGAGCTGAAGGTGCTGTGCTGGATGAAGCTAAAAACATCAACAAGTCACTTTCTGCTCTTGGAAATGTTATTTCTGCTTTGGCTGAGGGTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170759-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.367 A=0.048 C2=0.029
Domain overlap (PFAM):
C1:
PF0022518=Kinesin=FE(9.3=100)
A:
PF0022518=Kinesin=FE(13.1=100)
C2:
PF0022518=Kinesin=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGAGCGTTTTGTATGTAGT
R:
ACTACCCTCAGCCAAAGCAGA
Band lengths:
189-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)