GgaEX6018555 @ galGal3
Exon Skipping
Gene
ENSGALG00000007215 | E1C3A1_CHICK
Description
NA
Coordinates
chr2:14131397-14133690:+
Coord C1 exon
chr2:14131397-14131484
Coord A exon
chr2:14132871-14132995
Coord C2 exon
chr2:14133586-14133690
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTGTGTATTTTTAATTGCAGATA
3' ss Score
9.34
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GGTTGCACAGAGCGTTTTGTATGTAGTCCAGAAGAAGTTATGGATACTATAGATGAAGGAAAATCAAACCGACATGTAGCAGTTACAA
Seq A exon
ATATGAATGAACACAGCTCTCGAAGTCATAGTATTTTTCTTATTAATGTAAAGCAAGAGAATACTCAAACAGAACAGAAGCTAAGTGGAAAACTCTATCTTGTGGACTTGGCAGGTAGCGAAAAG
Seq C2 exon
GTTAGCAAAACTGGAGCAGAAGGTGCTGTGCTGGATGAGGCTAAGAACATCAACAAGTCTTTGTCTGCTCTTGGAAATGTCATCTCAGCTTTGGCTGAAAGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007215-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.048 C2=0.029
Domain overlap (PFAM):
C1:
PF0022518=Kinesin=FE(9.3=100)
A:
PF0022518=Kinesin=FE(13.1=100)
C2:
PF0022518=Kinesin=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGAGCGTTTTGTATGTAGT
R:
GCCAAAGCTGAGATGACATTTCC
Band lengths:
179-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]