RnoEX0047105 @ rn6
Exon Skipping
Gene
ENSRNOG00000017466 | Kif5b
Description
kinesin family member 5B [Source:RGD Symbol;Acc:621559]
Coordinates
chr17:54194410-54196086:+
Coord C1 exon
chr17:54194410-54194497
Coord A exon
chr17:54194649-54194773
Coord C2 exon
chr17:54195982-54196086
Length
125 bp
Sequences
Splice sites
3' ss Seq
GCTTATTAATTTCATTGCAGATA
3' ss Score
7.54
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GGGTGCACAGAGCGTTTTGTGTGTAGTCCAGATGAAGTTATGGATACCATAGATGAAGGGAAATCCAACAGACACGTAGCAGTTACAA
Seq A exon
ATATGAATGAACATAGCTCTAGGAGTCACAGTATATTTCTTATCAATGTAAAGCAAGAGAATACACAGACAGAACAGAAACTCAGTGGGAAGCTTTATCTGGTTGATTTAGCTGGAAGTGAAAAG
Seq C2 exon
GTTAGTAAAACTGGAGCTGAGGGTGCCGTGCTGGATGAAGCTAAGAACATCAACAAGTCACTTTCTGCACTTGGAAATGTCATTTCTGCTTTGGCAGAAGGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017466-'9-7,'9-6,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.367 A=0.048 C2=0.029
Domain overlap (PFAM):
C1:
PF0022518=Kinesin=FE(9.3=100)
A:
PF0022518=Kinesin=FE(13.1=100)
C2:
PF0022518=Kinesin=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGAGCGTTTTGTGTGTA
R:
ACTGCCTTCTGCCAAAGC
Band lengths:
189-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]