BtaEX0019830 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032277 | KYNU
Description
kynureninase [Source:HGNC Symbol;Acc:HGNC:6469]
Coordinates
chr2:53845637-53855361:-
Coord C1 exon
chr2:53855309-53855361
Coord A exon
chr2:53852969-53853054
Coord C2 exon
chr2:53845637-53845867
Length
86 bp
Sequences
Splice sites
3' ss Seq
AAGTGATATTAATTTTTCAGAAC
3' ss Score
5.14
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTAGTGGGATGGTTCGGCCATGAACTAAGCACCAGATTTCAGATGGATAACA
Seq A exon
AACTGCAGTTAATCCCTGGAGTCAATGGATTCCGAATCTCAAATCCTCCCATTCTGTTGGTCTGCTCCTTACATGCTAGTTTAGAG
Seq C2 exon
ATCTTTAAACAAGCAACTATGAAAGCACTGAGGAGAAAATCTATTTTGCTAACTGGTTATCTGGAATACATGATCAAGCAGTACTTCAGCCAGGACAAAGCAGAAAGCAAGAAAACAGTTGTGAACATAATTACTCCATCCTGTATAGCGGAACGTGGCTGCCAGCTAACCCTAACATTTTCTATTCCAATAAAACACATTATCCAAGAACTAGAAAAAAGAGGAGTGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032277-'15-18,'15-16,16-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(5.4=100)
A:
PF0026614=Aminotran_5=FE(8.4=100)
C2:
PF0026614=Aminotran_5=PD(16.2=70.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCGGCCATGAACTAAGC
R:
TCACAACTGTTTTCTTGCTTTCTGC
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development