RnoEX0047953 @ rn6
Exon Skipping
Gene
ENSRNOG00000029993 | Kynu
Description
kynureninase [Source:RGD Symbol;Acc:71061]
Coordinates
chr3:28556166-28565140:+
Coord C1 exon
chr3:28556166-28556218
Coord A exon
chr3:28557999-28558084
Coord C2 exon
chr3:28564910-28565140
Length
86 bp
Sequences
Splice sites
3' ss Seq
ACATCATATTAAATTTTCAGAAC
3' ss Score
7.32
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTTAGTGGGATGGTTCGGCCATGAACTCAGTACAAGATTTAACATGGATAACA
Seq A exon
AACTACAATTAATCCCCGGGGTCAATGGATTCCGAATTTCCAACCCTCCCATTCTGTTGGTCTGCTCCTTGCATGCCAGTTTAGAG
Seq C2 exon
ATCTTTCAGCAAGCAACTATGACTGCGCTGAGGAGAAAATCCATTCTGCTGACAGGTTATCTGGAATACTTGCTCAAACATTACCATGGCGGAAATGACACAGAAAACAAGAGGCCAGTTGTGAACATAATCACCCCATCCAGAGCAGAGGAACGAGGCTGCCAGCTGACACTGACCTTTTCCATTTCCAAGAAAGGCGTTTTTAAGGAACTAGAAAAAAGAGGAGTCGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029993_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(5.3=100)
A:
PF0026614=Aminotran_5=FE(8.3=100)
C2:
PF0026614=Aminotran_5=PD(17.2=75.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCGGCCATGAACTCAGTA
R:
TGTTCACAACTGGCCTCTTGT
Band lengths:
169-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]