DreEX0042322 @ danRer10
Exon Skipping
Gene
ENSDARG00000099546 | kynu
Description
kynureninase [Source:ZFIN;Acc:ZDB-GENE-120215-204]
Coordinates
chr6:596616-599116:+
Coord C1 exon
chr6:596616-596668
Coord A exon
chr6:597741-597826
Coord C2 exon
chr6:598886-599116
Length
86 bp
Sequences
Splice sites
3' ss Seq
GTGAATGAATATTCCTGCAGAAA
3' ss Score
5.43
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
ACTGACGGGCTGGTGGGGACATGACCTGAAGACCAGATTCCTCATGAATAACG
Seq A exon
AAATGGATCTTCAGCCTGGTGTTAATGGATTTCGTCTGTCCAATCAGCCAATCCTACTGGTGTGTCCTTTACAGGCCAGTCTAGAG
Seq C2 exon
ATTTTCAATCAGACCACCATGAAGGACCTGAGGAGTAAGTCGGTGCTGCTGACGGCTTATCTGGAGTTTCTGATCCGCCATTATTACAGCAGAGATCCGTCAGATCCAGACAGACCCTCGGTGCACATCATCACCCCGTCGGACCCTCAGCAGAGAGGCTGCCAGCTGTCCCTGAGCTTCAGCAGTCCTATCAGAGCTGTGTTTGAGGAGCTGGAGAAACGAGGAGTCGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099546-'11-11,'11-10,12-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.117
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(5.5=100)
A:
PF0026614=Aminotran_5=FE(8.5=100)
C2:
PF0026614=Aminotran_5=PD(14.6=62.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGACATGACCTGAAGACCA
R:
GTGATGATGTGCACCGAGGG
Band lengths:
173-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]