MmuEX6101088 @ mm10
Exon Skipping
Gene
ENSMUSG00000026866 | Kynu
Description
kynureninase (L-kynurenine hydrolase) [Source:MGI Symbol;Acc:MGI:1918039]
Coordinates
chr2:43671359-43679982:+
Coord C1 exon
chr2:43671359-43671411
Coord A exon
chr2:43672671-43672756
Coord C2 exon
chr2:43679752-43679982
Length
86 bp
Sequences
Splice sites
3' ss Seq
CATCATATTAATTTTTTCAGAAC
3' ss Score
6.82
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTTAGTGGGATGGTTCGGCCATGACCTCAGTACAAGGTTTAACATGGATAACA
Seq A exon
AACTACAATTAATCCCCGGGGCCAATGGATTCCGAATTTCAAACCCTCCCATTTTGTTGGTCTGCTCCTTGCACGCCAGTTTAGAG
Seq C2 exon
GTCTTTCAGCAAGCAACTATGACTGCGCTGAGAAGAAAATCCATTCTGCTGACAGGTTATCTGGAATACATGCTCAAACATTACCACAGCAAAGATAACACCGAAAACAAGGGGCCGATTGTGAATATCATCACCCCGTCCAGAGCAGAGGAGCGTGGCTGCCAGTTAACACTCACCTTTTCCATTCCCAAGAAAAGCGTTTTTAAGGAACTAGAAAAAAGAGGAGTCGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026866-'14-28,'14-22,19-28=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.064
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(5.4=100)
A:
PF0026614=Aminotran_5=FE(8.4=100)
C2:
PF0026614=Aminotran_5=PD(16.4=71.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGGCCATGACCTCAGTAC
R:
ATTCACAATCGGCCCCTTGTT
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types